Pseudomonas syringae pv. syringae B728a: Psyr_0680
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Entry
Psyr_0680 CDS
T00246
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Psyr_0680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_0680
Enzymes [BR:
psb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Psyr_0680
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Psyr_0680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AAY35750
UniProt:
Q4ZYM2
LinkDB
All DBs
Position
777540..781013
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AA seq
1157 aa
AA seq
DB search
MSVTTSLSAGFMVVQGNRPDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DAQDEDNGGCGIAAAIDVQLPGSFMWTLYRMVLGADEIPQTSLLDKTPLTWRLMRLLPSL
INQPHFEPLQRFLTDDTDLRKRYQLSERLSDLFDQYQVYRADWLQDWAAGRHQLRDVRGQ
SRPLSAANCWQAELWRALLDDVGAEGMSQSRAGVHQRFIERIGNMTEAPPGLPARVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWTDIVADKDLLRHQYKRQARKSGMPMVL
DPQALHQHAHPLLAAWGKQGRDYINLLDSHDDPRSYRSSFKDERIDLFSESEPTNLLNQL
QDDILELRPLDETRELWPAVNPSEDRSIRFHVAHSAQREVEVLHDQLLARFSKDPGLRPR
DVIVMVPDIDSYAPHIRAVFGQIEREDRRFIPFTLADQGQRGREPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFRIQERDLPTLHRWIEGAGIRWGLNAQQRAGLGLPDALEQNS
WHFGLRRMLLGYAVGAGAAYDGIEPYDEIGGLDAALIGPLVALIDALQVAHTELSTPTTP
EAWGARLQSLLQLFFLADSEHDDYLLAQLETLRENWLETCATVRLTDELPLTVVREAWLA
GLDQGRLSQRFLAGSVNFCTLMPMRAIPFKVVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGHSIRDNSERPASVLIGQLRDHLASGWKLAG
ETDPDGKHDDQRLLKALTVNHPLQPFSANYFHAGTGYFSFAREWRLLHETDLQVPVPQAL
PAHEQEEPLSIAQLQDFLRNPVKHFFSQRLKIYFEVAEAPLADEEPFVLDALERYGLSES
LLSAAMVSPDDMDAALKTQALKLQASGLLPLAGFGTLMQSELIEPLPDVLRRYHDLLTLW
PETLSSALPIGFSHAGVSIDGWLGGLHRNARGELLLVTAIPNSIGSKKTRKWHRLIRPWV
NHLVACACDLPLSTALVASDETLMLEPLDKASAVTTLNHLLTAWLHGMQEPLPVAVKTAF
AWLGQPADKAEAAARKAYEGDGQTTDGERRESTALARQFPDFDALIDSEEFAGWCETLYK
PIYDAPWQSLSGGEGGA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttacaacctctctgagtgcaggcttcatggtggttcaaggcaaccgcccggat
gaactgcgcagtctggttgtgtcctggatgcggcgttatccattggcgcccctggaaaac
gagattgctctggtgcagagcaacggcattgcacagtggctgaagttggccttggccgaa
gatgctcaggatgaagataacggtggctgtggtatcgctgccgccatcgacgtccagttg
cccggcagtttcatgtggacgctgtatcgcatggtgctgggtgcggatgagatcccccag
acgtccttgctcgacaagacccctttgacctggcgcttgatgcgcttgttgccgtcgctg
atcaatcagccgcacttcgagccgctgcagcgcttcctgaccgacgacactgatctgcgc
aagcgctatcaattgtccgaacgcctgtccgatctgttcgaccaatatcaggtttaccgg
gctgactggctgcaagactgggccgctggccgccatcaattgcgcgacgtacgaggtcag
tccagaccattgtcagctgccaattgctggcaagccgaactgtggcgcgcgttgctggac
gacgtcggggctgaagggatgtcgcagagccgtgcaggcgtgcatcagcgcttcatcgag
cgcatcggcaacatgaccgaagcgccaccgggcttgccggcacgggtcattgttttcggc
atttcgtcactgccggcacaagcgctcgaggcgttggcagggctggccagattcagtcag
gttctgctctgtgtgcacaatccgtgtcgtcaccactggaccgatatcgtcgccgacaag
gacctgttgcgtcaccagtacaagcgtcaggcgcgcaagagcggcatgccgatggtcctc
gacccgcaagcgctgcatcagcatgctcatccgttgctcgcggcctggggcaagcaggga
cgtgattacatcaacttgctggacagccacgacgacccacgcagctaccgttcctcgttc
aaggacgagcgcattgacctgttcagtgagtcagagcccaccaacctcctgaaccagctg
caggacgatatccttgagctgcgtccgctggatgaaacccgtgagctgtggccggcagtc
aatccttctgaggaccgctcgatccgcttccatgtggctcacagcgcgcagcgcgaagta
gaggtgctgcatgaccagctactggcgagattcagcaaagaccctggcctgcgcccgcgt
gacgtgattgtcatggtcccggatatcgacagctatgccccgcacatacgagcagtattc
gggcagatcgagcgcgaagatcgtcgcttcatcccctttacgctggctgaccagggccag
cgcggccgcgagccgttgctgattgctgtcgagcacctgctcaaactcccggacagccgt
ttcccggtcagcgagattctcgacctgctggacgttccagccttgcgcgcacgcttcagg
attcaggagcgtgacctgccaacgctgcatcgctggatagaaggcgcaggtattcgttgg
ggcctcaatgctcaacagcgtgccggtctggggctgccggatgcccttgagcagaacagc
tggcatttcggcctgcgtcgcatgttgctgggttacgccgtgggtgccggcgcggcttac
gacggcatcgaaccctacgatgagatcggcgggcttgatgcggcgttgatcggtccgctg
gtcgcgttgattgatgctctccaggtcgcccacacagagttgtcgacacccaccactccg
gaagcatggggtgctcgcctgcaatcgctgctgcagttgttcttcctcgccgacagcgag
catgacgactacttgcttgcccagcttgaaacactgcgcgagaactggctggaaacctgt
gcaacggtaagactgaccgatgagctgccgctgaccgttgtgcgtgaggcctggctggcc
gggctcgatcaagggcgcctgtcccagcgttttctggcgggctcggtcaacttctgcacg
ctgatgcccatgcgcgccatcccgttcaaagtggtctgcctgttaggcatgaacgacggc
gattacccgcgtgcgcaaccgccgctggatttcgatctgatgggcagcgattaccgaccc
ggcgaccgctcccggcgtgaagacgatcgctacctgttgctggaagccttgctctcggcc
agagaccagttgtacgtcagttgggttggccatagcattcgtgacaacagtgagcgtcca
gcttcggtgctcatcggtcagctgcgcgatcacctcgccagtggctggaagctggccggc
gagaccgatccggacggtaaacacgatgatcagcgcttgctgaaagccctgactgtgaat
cacccgttgcaacccttcagcgccaattacttccacgccggcacaggttatttcagcttc
gcccgcgagtggcgcctgctgcatgaaaccgaccttcaggtgcccgtgcctcaagcgctg
ccggctcatgaacaggaagaaccgctgtccattgcgcagttacaggatttcctgagaaac
ccggtaaagcactttttcagtcagcgcctgaagatctatttcgaggtggctgaagcgccg
ctcgccgatgaggaaccgttcgtgctcgatgcccttgagcgttacggcctcagtgaaagc
ctgctcagcgcagcgatggtttcccctgacgatatggatgccgccctgaaaacccaggcg
ctgaaactgcaagccagtggactgctgccgctcgcgggcttcggcaccttgatgcagagc
gagctgatcgagccgctgcctgacgtactcaggcgctaccacgatctgttgaccctctgg
cccgagaccctgagcagcgctttaccgatcggcttcagccatgcgggtgtgagcatcgac
ggctggctgggcgggctgcaccgtaacgcccgtggcgagctgttgctggtcactgcaatt
cccaacagcatcggctcgaaaaagacccgcaagtggcaccggctgattcggccgtgggtc
aatcacctggtggcgtgcgcctgcgacctgccgttgagcacggcactggtcgccagtgat
gaaaccctgatgctggagccgctggacaaggcgagtgccgtcaccacgctcaatcacttg
ctgacggcctggctgcacggcatgcaagaaccccttccggtggcggtcaaaaccgccttc
gcctggttgggccagcctgccgacaaagccgaagcggctgcccgcaaagcctacgaaggt
gacggacagactaccgatggcgagcgccgcgaaagcacggcactggctcggcagtttccc
gactttgacgcactgatcgacagtgaagaattcgcaggctggtgcgagacgctctacaaa
ccgatttacgacgcgccctggcagtcgttgtccggcggggagggcggcgcatga
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