Pseudomonas syringae pv. syringae B728a: Psyr_1298
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Entry
Psyr_1298 CDS
T00246
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03410
Base excision repair
psb03430
Mismatch repair
psb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Psyr_1298
03430 Mismatch repair
Psyr_1298
03440 Homologous recombination
Psyr_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_1298
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Psyr_1298
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Psyr_1298
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Psyr_1298
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AAY36349
UniProt:
Q4ZWX3
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All DBs
Position
1465993..1467708
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AA seq
571 aa
AA seq
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MRIEPRPLPDTLPFLGDLPPLLTRLYAARGVACEAELDKSLARLIPYQQLKGIDAAVDLL
VTALREGQRMLIVGDFDADGATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEV
ALQREPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTF
PSKSLAGVGVIFYVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANN
RILVHQGLMRIRAGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGI
ECLLCDDPTLAREMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAEWH
QGVIGILASRLKERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKF
GGHAMAAGLSLPEENFPAFAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALR
NAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDRDIWPNPN
IRWVELAYKLDLNEFRGNETVQLMVVHIAPR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgaacctcgtccattgcccgacaccttgccgttccttggcgacctgccgccc
ttgctcactcgtctgtacgcagcacgaggtgtggcctgcgaggccgaactggacaaaagc
ctggcgcggctgatcccctatcagcaactcaaggggatcgatgcagcggtagacctgctg
gtcactgcgctgcgcgagggccagcgcatgttgatcgtcggcgatttcgacgccgatggc
gcgaccgccagcaccgtgggtgttctgggactgcgtctgctgggcgcagtgcatgtggat
tatctggtgcccaaccggtttgaatatggctacggccttacgccggaaatcgtcgaagtg
gcattgcagcgcgaacctcagctgttgatcaccgtggataacggcatttcgagcgtcgag
ggtgtagcagcggccaaggcggccggcttgcaggtactggtgaccgatcaccatttgcct
gggcatgagcttccggctgcagacgccatcgtcaacccgaatcagccaggctgtaccttt
cccagcaagtcgctggccggtgtcggggtcattttctacgtactgatggccttgcgggcg
cgtctgcgcgagaccggctggttcgagagcaatcagcgtgcccagcccaatctgggcgag
cttctggatttggtcgcgctgggcagtgtggccgatgtggtgccgctggacgccaacaac
cgcattctggtccatcaggggctgatgcgtatccgtgccgggcgtgccagaccggggctg
cgcgccattctcgaagtggcacgacgtgaaccttcgcgcatcacctccaccgacctgggg
ttcattctcgggccacgcctgaacgcggcagggcgcctggatgacatgagcctgggcatc
gaatgcctgctctgcgacgacccgacactggcgcgggaaatggccgtgcaactggatgag
ttgaaccaggatcgcaaatccatcgagcagggcatgcagcgtgaagcactcgcccagctc
aaggacctgccgctggagtcgatgccgtttggcctctgcctgttcgatgccgaatggcac
cagggtgtcatcggcatcctcgcttcgcgtctcaaggagcgttaccaccgcccgaccatc
gcgttcgccagcgccggggagggcgtgctcaaaggctcggcccgctcggtgccagggttt
cacattcgcgacgcgctggacgccgtggcggccagtcatccgcacctgatcagcaagttc
ggcggccacgcgatggcggcaggtctttcgctgcctgaagagaacttcccggcatttgcc
gcagcgttcgaccaggaggtgcgtcgtcagctcgatgagcaggacctgaccgggcgtttg
ctgtccgacggctcgctggccgtcgaggagtttcatctggagctggcccgtgcactgcgc
aatgccggtccctgggggcagcacttcccggagcctttgttccacggcgtgtttcagctg
gtcgagcaacgggtggtgggcgagcgtcatttgaagatggtgctcaagaccgaatgcggc
agcgtcaagctcgatggcattgcgttcggcgtcgaccgggatatctggcccaatccgaat
atccgctgggtcgagctggcctacaaactcgatctcaacgagtttcgcggtaacgaaacc
gtgcaattgatggtggtgcatatcgcgccacgctga
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