Pseudomonas syringae pv. syringae B728a: Psyr_1563
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Entry
Psyr_1563 CDS
T00246
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psb03016
]
Psyr_1563
Enzymes [BR:
psb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Psyr_1563
Transfer RNA biogenesis [BR:
psb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Psyr_1563
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AAY36611
UniProt:
Q4ZW61
LinkDB
All DBs
Position
1760015..1761148
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AA seq
377 aa
AA seq
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MAIDIHWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPL
LINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQEVLDIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTILRPRLSDDKYAWL
LDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARARNLPRNRIV
REHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTASVLPPEEWPPALPEPL
PIDAAGSIKRLRAIGQQYAEQLDMAPELMLRKKTLEALLKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLAAPGEPS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacgacgacagcctcgcccggcattgcgcacaa
tggcagtcactgcctttcgtggcgctcgacaccgagttcatgcgggtcgacactttttat
ccgatcgccgcgctgctgcagatcggcgacgggcagagcgcctggctgattgatccgttg
ctgatcaacgactggcggccgctgtctgcgttgctcgaaaaccccgacgtcatcaaagtg
gtgcatgcgtgcagcgaagacctcgaggtgttgctgcgcctgaccggcagcctgccggtt
ccgctgttcgatacccagttggcagccgcctacctgaacctcggtttttccatgggctac
tcgcgcctggtgcaggaggtcctcgacatcgacctgcccaagggcgaaacccgttccgac
tggctgcaacgcccgttgtcggaaacgcaggtcagctacgctgccgaagacgccgtgcac
ctggccgagctattcaccatcctgcgcccgcgcttgtccgacgacaaatatgcctggctg
ctggatgacggtgccgaactggtcgccaacctgcgccgtgaggtggacccgtacgaggtg
tatcgcgacgccaagctggcctggaagctgtcccgcgcccagctggcggtgctgcgcgag
ttgtgtgcctggcgtgagcgtgaggcgcgcgcccgtaatctgccgcgcaaccgtatcgtg
cgtgagcactcgctctggccattggccaagacccagccggacaacctcggcgcgctggcg
cggatcgaggacatgcacccgcgtacggtccgtcatgacggcgagtttctgctcgagctg
atcaagaccgcgagcgtgctgcctcccgaagagtggccacctgcgttgcccgagccattg
cccatcgatgcggccgggtcgatcaagcgtctgcgtgcaatcggccagcaatacgccgag
caactggacatggcgccggagctgatgctgcgcaagaagaccctcgaagccctgctcaag
agcggctaccccgacggtccttaccaattgcccgactcgctgcgtggctggcgtcgcgag
ttgatgggtcaggcgctgctggacagcctggccgcccccggagaaccgtcttga
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