Pseudomonas syringae pv. syringae B728a: Psyr_1638
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Entry
Psyr_1638 CDS
T00246
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_1638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_1638
03009 Ribosome biogenesis [BR:
psb03009
]
Psyr_1638
Enzymes [BR:
psb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Psyr_1638
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psyr_1638
Ribosome biogenesis [BR:
psb03009
]
Prokaryotic type
rRNA processing factors
Psyr_1638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AAY36686
UniProt:
Q4ZVY6
LinkDB
All DBs
Position
complement(1842286..1845648)
Genome browser
AA seq
1120 aa
AA seq
DB search
MCAERRFRQPGNRRYYMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIIILPNDQLETPHFEVQRLRDDSPEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQ
EAAVKTAPARANAPVPVEAAAPAPTPAPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVV
VEKPVAEQRPARNEERRNGRQQSRGRNNRRDEERKPREERAPREERAERAPREERAPREE
RAPREERTVREPREAREESTPREERPARTTRERKPREAREDRPVRELREPLDAAPAVSLA
REERPERAPREERQPRAPREERQPRAEQAAAAVSEEEEVLLNEEQTNNENQEGNDGSEGD
RPRRRSRGQRRRSNRRERQRDANGNVIEGSEENGNEEEGSATDLSAGLGFTAAASAASSV
ISAPAEADAHQQAERANSNAATADAEPVHQETAAEAPVTETSVAETPATEAPVAEKAQTV
AEPTVEAPAVEAPVADDAPVAQPAPEVEVQPAAVEAPAIAAQSELFEAPHAERVVPFKPT
PEPAPQAPVEAAAHEEVPATESSELPTPAPAAVVEPVALQEEPAPYVAPQPVVEEQAPAP
QEQAPAAEEAAPAPVVSSTGRAPNDPREVRRRKREEEARRQQEAAAASAPVVEAAPAAAE
AESAQPSPAAEEKTEEAATEQPAVKPQHEAEKENEPKPLV
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtactacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgcctc
tacgacctggacatcgagtcaggtgcacgcgagcagaagaaggccaacatctataaaggc
cgaatcactcgcatcgaacccagccttgaggctgcctttgtcgatttcggctctgagcgc
cacggctttctgcccctcaaggaaatctcccgcgagtacttcaagaaagcccctgaaggc
cgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgagaaa
gaagaacgtggcaacaagggcgcagccctgaccaccttcatcagccttgccggccgctac
ctggttctgatgcccaacaaccctcgtgccggcggcatctcgcgtcgtatcgaaggtgaa
gagcgcaacgaactgcgtgaagccctcaatggcctgatcgcgccagccgacatgggtctg
atcgttcgtactgcaggcctgggccgcagcagcgaagaaatgcagtgggacctcgattac
ctgctgcaactgtggaccgccatcaaggaagcgtccctcgatcgctccgcccctttcctt
atctaccaggaaagcaacgtcatcatccgcgctatccgcgactacctgcgtcaggatatc
ggtgaagtcctgatcgacagcatcgaagcccaggaagaagcactgaccttcatccgtcag
gtgatgccgcagtacgccagcaagatcaagctttacgaagacagcgtcccgctgttcaac
cgcttccagatcgaaagccagatcgaaaccgccttccagcgcgttgtcgaactgccttcc
ggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgacatcaactcggcg
cgcgccaccaaaggcagcgacatcgaagaaactgccctgcagaccaaccttgaagcggct
gaggaaatcgcccgtcaactgcgtctgcgtgacatcggcggcctgatcgtcatcgacttc
atcgacatgacgccggccaagaaccagcgcgccgtggaagagaaagtccgcgaaagcctg
gaagccgaccgtgcccgcgtgcagatcggtcgtatttcgcgcttcggcctgctggaaatg
tcccgtcagcgcctgcgtccatcgctgggcgaaagcagcggcatcgtctgccctcgctgc
aacggcaccggcatcatccgtgatgttgaatcgctgtcgctggccatcctgcgcctgatc
gaagaagaagccctgaaagaccgcactgccgaagtgcgcgctcaggtgccgatcccggtc
gcggccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacccgt
gcccgcatcatcattctgccgaacgatcagctggaaacgccgcacttcgaagttcagcgt
ctgcgtgatgacagccctgaagcgcacagcagccagaccagctacgaaattgctgctgcc
gctgccgaagtggaagaaattgcaccattggccgctgcaacccgcaccctggttcgtcag
gaagcagccgtcaagactgccccggctcgcgccaatgcgccggtcccggtagaagccgcg
gccccggcaccaacgcctgcacccgcacctgtcgctcacgagccaagcctgttcaagggt
ctggtgaaatctctggtcagcctgttcgcgaccaaggaagagcctgttgctccggtcgtg
gtcgagaaacctgttgcagaacagcgcccagcccgcaacgaagaacgccgcaacggccgc
cagcagagccgtggccgcaacaatcgccgcgacgaagagcgcaagcctcgtgaagaacgc
gccccccgcgaagaacgcgcagagcgcgcacctcgcgaagagcgtgcgccgcgtgaggaa
cgtgcacctcgtgaagagcgcaccgttcgcgaaccgcgtgaagcccgcgaggagtcgaca
ccgcgcgaagagcgtccagcccgtaccacccgcgagcgcaagccgcgtgaagcgcgtgaa
gatcgtccggttcgcgaactgcgcgagcctctggatgcagcacctgcggtgagcctcgct
cgtgaggagcgtcctgaacgcgccccccgtgaagagcgccagccgcgcgcacctcgtgaa
gaacgtcaaccacgcgccgaacaggctgcggctgccgtgagcgaagaagaggaagtgctg
ctcaacgaagagcagaccaacaacgagaaccaggaaggcaacgacggcagcgaaggcgac
cgccctcgccgccgctcgcgtggccagcgtcgtcgcagcaatcgtcgtgagcgtcagcgc
gatgccaatggcaacgtgatcgaaggctccgaagagaacggcaacgaagaagaaggcagc
gccaccgacctgtcggcgggtctgggcttcaccgccgcagcttccgctgccagcagcgtg
atcagcgcgcctgccgaagccgacgcgcatcagcaggccgaacgtgccaacagcaacgca
gccactgcggacgccgagcctgtgcatcaggaaactgctgccgaagcgcctgtgactgaa
acgtcagtagctgaaacgccagccaccgaagcaccggttgccgaaaaagcacagaccgtt
gccgagccgactgtcgaagcaccggccgttgaagcccctgtggcagacgatgctcctgta
gcgcagcctgctccagaggttgaagttcagccggcagcggtcgaagcacctgcgattgct
gcacagtccgaactgttcgaagcacctcacgcagaacgcgtagtgccgttcaagccgacg
ccagagcccgcaccacaggcgccggtcgaagcagcggctcatgaggaagtgccagccact
gaatcatccgaactgccaacgcctgcacctgctgctgtcgtcgagccggtagcgctgcaa
gaagagcctgctccttacgtcgcgcctcagccggtcgttgaagaacaggcacctgcccca
caagagcaggcacctgcggctgaagaagcagcgcctgcaccagtggtcagcagcacaggc
cgcgcaccgaacgatcctcgtgaagttcgtcgccgcaagcgtgaagaagaagcacgtcgt
caacaggaagccgctgctgccagcgctccagtcgtcgaggcggcgcctgctgccgctgaa
gcagaatcggcccagccttcaccggcagccgaggaaaagaccgaagaagcggcaactgag
caaccagcagttaaaccgcaacatgaagccgagaaagaaaacgagcctaaacccctcgtc
taa
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