Pseudomonas syringae pv. syringae B728a: Psyr_1896
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Entry
Psyr_1896 CDS
T00246
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psyr_1896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_1896
Enzymes [BR:
psb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psyr_1896
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Psyr_1896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAY36940
UniProt:
Q4ZV82
LinkDB
All DBs
Position
complement(2166974..2170426)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPHLSAAAGKQHWGNLPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPF
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGAGRERFPAQSLPDL
SIEAKATQPLAALSTFLDDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVDG
KDRLAITIAPLDEGLLLEQPALALIAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
ETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEEALKDLQVEMIDRFGLLPEPTKNLVRITLLKLHAEQLGIRK
IDGGPQGGRIEFAAETPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIEA
LLERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcatctttctgccgctgcaggcaaacaacactggggcaat
cttcccggtgccacactgagcctggccattgccgaagccgccagcgcggccaagcgcttc
accctgctcctgaccgccgacagccaaagcgccgagcggctcgagcaagagctgaagttt
tttgcacctacgctgccggttctgcacttcccggactgggaaaccctgccctacgacctg
ttttcgccgcaccaggacatcatttcccagcgcattgccagcctttatcgcctgccggaa
ctggagcatggcgttttggtagtccccatcaccaccgccctacacagactggcgccgacc
aaatttctgctcggcagcagcctggtgctggatgtcggccagaagctcgatgtggaagcc
atgcgtacgcgcctggaagccagcggctaccggtatgtggacacggtctacgaacatggc
gagttcaccgtgcgcggggcgctgatcgatctgttcccgatgggcagcaaactgccgttt
cggatcgacctgttcgacgatgaaatcgaaacgctgcgcaccttcgatccggacacccag
cgctccatcgacaaagtcgagtcggtgcgcctgttgcccgcccgtgaattcccgttacag
aaagaagaagtcacgcgcttcaaggcgcgctttcgcgagcgcttcgacgtggacttccga
cgcagcccgattttccaggacttgagcagcggtatcacacctgccggcatcgagtactac
atcccgctgttcttcgaagaaacctcgacgctgttcgattatctgccgcaggacacccaa
gtgttttccctgccgggcatcgaacaggctgccgagaacttctggaacgacgtgcgcaat
cgctatgaagaacgccgcgtcgaccctgcaaggccgctgctgccgccggccgagttgttt
ctaccggtggaagactgcttcgcgcgcctgaaaaactggccgcgcgtggttgccagccag
caggatgtcgacgccggtgccggacgcgagcgcttcccggcgcagtccctgccggacctg
tccatcgaagccaaggccactcaaccactggcggccctgtcgacgtttctggatgacttc
cccggtcgcgtgctgttcaccgccgagtccgccggacgccgggaagtactgctggaactg
ctcgaacgcctcaagctgcgccccaaaaccgtcgacagctggctggatttcgtcgacggc
aaggaccgactggcaatcaccatcgcaccgcttgacgaaggcctgctgctggaacaacca
gccctggcgctgatcgcagaaagcccgctgttcggccagcgcgtcatgcagcgccgtcgc
cgcgaaaagcgcaccgacggcggcaacaacgatgcggtcatcaagaacctcaccgagctg
cgcgaaggcgcgccggtggtgcacatcgatcatggcgtgggccgttatctcgggcttgcg
acccttgaagtcgaaaaccaggtcgccgaattcctgatgctggcctacgccgaagacgcc
aagctgtacgtacccgtcgccaacctgcacctgattgcccgctacaccggcagcgacgac
gaaaccgcgccgctgcaccgcctgggttcggaaacctggcagaaagccaaacgcaaggct
gccgagcaggtccgtgacgtggccgccgaactgctggatatctacgcgcgtcgcgcggcc
cgcgaaggctatgcgtttgccgacccgaaagccgattacgcgaccttcagcgcaggcttc
ccgttcgaagagacgccggatcagcaaaccaccatcgacgccgtgcgcgccgacatgctg
gcgcccaagccgatggatcgtctggtctgtggcgacgtgggtttcggcaagaccgaagtg
gccatgcgtgccgccttcatcgccgtgcatggcgggcgtcaggtggccattctggtgccg
accaccctgctcgcgcagcagcactacaacagtttccgcgaccgtttcgccgactggccg
gtgaccgtcgaggtgatgagccgcttcaagtcggccaaggaagtcagcgccgcagttgcc
gatctggccgagggcaagatcgacatcgtcatcgggacgcacaagctgttgcaggatgac
gtcaagatcaagaacctcggcttggtgatcatcgacgaagaacaccggtttggcgtgcgc
cagaaagaacagctcaaggcgctgcgcagcgaggtcgatattctgaccctgaccgcaacg
ccgatcccgcgcaccctgaacatggccgtgtctggcatgcgtgatctgtcaatcatcgcc
acgccaccggcgcgtaggctgtcggtgcgtaccttcgtgatggagcagaacaagccgacc
atcaaggaagccctgctgcgtgagctgttgcgcggcggccaggtctattacctgcacaac
gacgtcaagaccatcgagaaatgcgccgccgatctggccgagctggtgccggaagcgcgt
atcggcatcggacacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttc
taccacaagcgcttcaatgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccgagcgccaacaccatcatcatcgagcgcgccgacaagttcggtctggcccagttgcac
cagttgcgcggtcgtgtcgggcgcagtcaccaccaggcttacgcctacctgctgaccccg
ccacgcaaacagattacccacgacgccgaaaagcgtctggaagcgattgccaatactcag
gaccttggcgcgggcttcgtgctcgccaccaatgacctggagatccgtggcgcaggcgaa
ctgctcggggacggccagagcggccagatccaggcggtgggctttaccctgtacatggaa
atgctcgagcgcgcggtgaagtcgattcgcaagggcgaacagcccaatctcgatcagcca
ctgggcggcggaccggaaatcaacctgcgcgtgccggccttgatccccgaagcctacctg
ccggatgtgcacacgcgcctgattctctacaagcgcattgccaacgctgctgacgaagaa
gcactgaaggacctgcaggtcgaaatgatcgaccgcttcggcctgctgccggaaccgacc
aagaatctggtgcgtatcacgctgctcaaactgcacgccgaacagctgggcatccggaaa
atcgacggtggcccgcaaggtggccgtatcgagttcgcggccgagacgccggttgatcct
ttgaccctgatcaagctgatccagagccagcccaaccgctacaagttcgaaggcgccacg
ctgttcaaattcatggttcccatggagcgcccggaagagcgcttcaacacgatcgaagcg
ctgcttgagcgcctgaccccgaaaactgcttga
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