Pseudomonas syringae pv. syringae B728a: Psyr_2914
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Entry
Psyr_2914 CDS
T00246
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_2914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_2914
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_2914
Enzymes [BR:
psb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psyr_2914
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psyr_2914
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psyr_2914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
DUF2250
Motif
Other DBs
NCBI-ProteinID:
AAY37948
UniProt:
Q4ZSC4
LinkDB
All DBs
Position
complement(3497794..3502215)
Genome browser
AA seq
1473 aa
AA seq
DB search
MSGGNSVLAPWVRHQFPATGKLIAELRDIPCGESQCDYCSTTHDPRHELRRYFAPIQDFR
TEPDGRSLQHDVVLAGMQGKHVLAILATGGGKSLCYQLPALNRFHRNGSLTIIISPLQSL
MKDQVDGLLARNVQCAATLNGLLTMPERAEVLEKIQLGDVGILLVSPEQFRNMAFRRAIS
QRQVGAWIFDEAHCLSKWGADFRPDYLYVSRFIKQFSGDGPLAAIGCFTATAKPDVLEDI
EQHFKEQLGITFKHFIGTHERTNLHFEVLPCSRSEKRHHAQTLIEEELGTREGGAVIFVS
SRKGAEELADFLIGHGWACKYFHAGLEPHEKKDIQDAFKGGELKIIVATNAFGMGVDKPD
IRLVIHADIPGSLENYLQEAGRAGRDQGQARCVLLYDAQDIENQFGMCERSKLTLRDIQQ
ILRKLRKESDRRKGSRLVITAGEVLMDEHVDTSFEAGERDAETKVATAVSWLERGQFLKR
EENQTQIFPASLKLTKEEADKRLATVKLSARRLEEFRAILSYLYEANVDERINTDALMAL
TSLTSEEVTATLRQMEDLGLLVNDSKLTLYVRHGVVFPSTQRLQATLQLESALFDLLQEL
APEAESGEWQDLNVPLLTSTLKTASGNKDLIPLHVLRLLRSLAQDHDSNSQQRSSFELRQ
ITQDFLKLRIRGGHNWRAIQGLGERRRALAAVVLTFLIGKLPPGSRNKDLLVDTTFGELM
GLIDLDLELRTRIPESQRRKAVEHVLLYLHKQEVITLNHGMTVMRRAMTIEVEGGKRTGF
LKDDYQRLDEHYREKRIQVHVMREYAEVGLGSMGYALDLVQHYFTLAKQEFIRRYFVDRE
EVLKLATSEESWRSIVEKLSAAQRIIVSDDDDVNRLILAGPGSGKTRVIVHRIAYLLRVR
RVPARCIVALTFNRHAANEIKQRLIKLVGADAFGVNVMTYHRMAMRLTGTRFERGETLEE
GRLAQVMGEAVELLEGKRQVEGEDDLREQLMRGYRYILVDEYQDIDDLQYRLVSALAGRK
SEEEGRLCILAVGDDDQNIYAWRDTNNRYIERFRDEYSATKNYLVDNYRSSGRIIDAANR
VIGRNPDRLKKDHPIQIDTVRRAMPKGGDWETLDIEREGRVLRLKIDAQGHARVNLQAQA
AMTELQRLLSLDSEDWHGCAVLARTHQNLLPLQAWCEAHGVPYCLAADKEGVLPLTAQRG
FVQAVEILREITEPLSASETWTYLGKRQLGPEWYDMLLVAFDQLTAEFGQCPLSAEILLD
WLYDYFRELRQQPRKGLYLGTVHSAKGLEFRHVVVLDGGWSTQPETLSDERRLYYVGMTR
AEQTLTLCEYPEGNPFCSQLTEEVMARTFQGEYLAELEKRYLQLSLKDIDLDYAGRQNPT
ASIHKVLAALEPGDMLSFKAHEDRYLIQDANGYVIGRTAKSFSLDLDIEECEVAAVLVRR
SDRCEESFRAYHRSQEWELVVPRIAGRVVMSDT
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaggcggcaactcggttctggcaccttgggtacgccatcaatttcctgcaacaggt
aaattgattgctgaactgcgtgatattccctgcggggagagccaatgcgactattgcagc
accactcatgatcctcgccacgagctcaggcgctacttcgctcctattcaggactttcgg
accgaaccagacggacgctccttacagcatgacgtggtgctggcaggcatgcagggcaag
cacgtgctcgcgattcttgcgacagggggcggaaaatccttgtgctaccagttaccggcg
ctgaaccgctttcaccgcaacggcagcttgacgatcatcatatcgccgctgcagtcgctg
atgaaagatcaggtcgacggcctactggctcgtaacgtccaatgcgctgcaactttgaat
ggtctgttgaccatgcccgagcgggcagaggtgctggagaagatccaattaggcgatgtg
ggcattttgctggtatcccccgagcagtttcgcaatatggcttttcgccgcgcgatctcc
cagcgtcaggtcggcgcctggatcttcgatgaggcgcattgtttgtccaaatggggcgca
gattttcgcccggattacctctatgtatcgcgcttcatcaagcagttctctggggacggt
ccgctcgcggcgattggctgcttcacggctacggccaaacctgatgtgcttgaggacatc
gaacagcatttcaaagagcagttgggcataaccttcaagcactttatcggtacccacgag
cgtaccaatctgcacttcgaggtcctgccgtgttctcgctcagaaaagcgccaccatgct
cagacgttaattgaggaagagctaggcaccagggagggtggcgcggtgatattcgtttca
agccgaaaaggcgctgaagagcttgcagactttttgatcggccacggatgggcttgcaag
tacttccacgctgggctggagccacatgaaaaaaaagatattcaggacgccttcaagggc
ggggaactgaagattatcgtggccaccaacgcttttggcatgggcgtcgacaaacccgat
attcgcttggtgatacatgctgatattccggggtcgctcgagaactacttacaagaagcc
ggtcgcgccggtcgcgatcaagggcaggctcggtgcgtacttctgtatgacgctcaggac
atcgaaaaccagttcgggatgtgcgaacgttcgaaactgaccctgcgtgatatccagcaa
atcctgcgcaagttgcgcaaggagagcgaccgacgcaagggcagcaggctcgtcatcact
gccggtgaggtgctgatggatgagcatgttgatactagctttgaagccggagaacgtgat
gctgaaaccaaggtagccacggcagtgtcctggcttgagcgagggcagtttttaaaacgg
gaggagaaccagacccaaatctttccggcaagcctgaagttgactaaggaggaggccgat
aagcgtctggccaccgttaagttatcggccaggcggctcgaagaattcagggctatcttg
agttatctgtacgaagctaatgtcgacgagcgaatcaacaccgacgccttgatggctctg
actagcctcacgtccgaagaagtcactgcgacactgcgtcagatggaggacttggggctt
ttggttaacgactctaagctgaccttatacgtccgacatggggtcgtgttcccttccact
caacgcctgcaagctaccttacagctcgagtctgccttgttcgacctgctgcaggaactg
gcgcctgaggccgagagtggggaatggcaggacctgaacgtgccactgttgacctcgacg
ctcaaaacagcttctggtaacaaggacctgataccgcttcacgtgttgcgactgctgcgc
agcctggcccaagatcacgacagcaatagccagcagcgcagcagtttcgaactgcgccag
atcactcaggatttcctcaagttgcgcatccgcggcggacacaactggagagctattcaa
gggctgggagagcgtcgacgtgctttggccgctgtcgtcctcacgtttttgattggcaaa
ttaccgccgggttcacgcaacaaagacctgttagtggatactacgttcggcgaacttatg
ggcctgattgatctggatcttgagctgcgcactagaatcccagagtcgcagcgccgcaag
gccgttgagcacgtactgctgtacctgcataagcaagaagtgattacgctgaaccacggc
atgacagtcatgcgtcgggctatgacgattgaagtcgaggggggaaagcgcaccggattc
ctgaaagatgattatcagcgtcttgatgagcactaccgagaaaaacgtattcaggttcac
gtcatgcgcgagtatgccgaggttgggcttggctcgatgggctatgccctggatctcgtt
cagcactatttcacactagccaaacaggagttcattcgccgctacttcgtagatcgcgag
gaggtacttaagctagccacgagtgaggaatcttggcgtagcattgtcgagaagcttagt
gctgctcagcggatcatcgtgtccgatgatgatgatgtgaatcgcctgattctggctggg
cccggctccggcaaaacgcgtgtgatcgtgcatcgaatcgcttacctgttgcgagttcgt
cgcgttccggcgcgctgtatcgtggctttgacgttcaaccggcatgcagcaaatgagatc
aagcagcgcctgatcaagttggttggcgctgatgcctttggggtcaacgtgatgacgtat
catcgcatggccatgcgcctgacgggcactcgcttcgagcgaggtgaaacgcttgaagaa
gggcgattagcccaggtgatgggagaggctgttgagttgcttgaaggcaagcgtcaggta
gaaggggaggacgatctgcgcgagcaattgatgcgaggctaccgctacatcctcgttgat
gagtaccaggacattgatgacctacagtatcggctcgtaagtgcgctggccgggcgtaag
tctgaagaagaagggcgcttgtgcattttggcagtcggtgacgatgatcagaacatctac
gcctggcgggatacgaataaccgctatatagagcgctttcgcgatgagtattcggctaca
aagaactatctggtcgacaactaccgttccagcggtcgcatcattgatgcggctaaccgg
gttattggtcgtaacccagatcgcctgaaaaaggaccatccgattcagattgatactgtt
cgtcgcgcaatgccgaaaggcggtgactgggaaaccctcgacattgagcgggaggggcgc
gtgcttcgcctcaaaatagacgctcagggccacgcacgggttaatctgcaagcccaggca
gcgatgacagagttgcagcgcctgctcagtttggacagcgaggattggcatgggtgtgcc
gtgctagcccgcacccatcaaaacctgctgccccttcaggcgtggtgtgaagctcacggc
gttccatattgtttggcagccgacaaggaaggtgtcttacctctcaccgctcaacgtggc
ttcgtgcaggctgttgaaatactaagagagattaccgaaccgctgagtgcctccgagaca
tggacatatctaggtaagaggcagctcgggccagaatggtacgacatgttactcgtcgcc
tttgatcagctaacagccgagttcggacaatgtccgctaagtgctgagatcctgctcgat
tggctctatgactatttccgggagctgcgtcagcaacctagaaagggtctctatctgggc
actgtccactccgccaaaggcctggagttccgccacgtagtcgtgcttgacggcggctgg
tccacgcagcctgaaacgcttagcgatgagcgtcgactctactacgtgggcatgactcgc
gccgagcagactttaaccttgtgtgaatacccagaaggcaatcctttctgcagccaactt
acggaagaggtcatggcgcgaaccttccaaggagaataccttgcggagctggagaagcgt
tacctacaactctctttgaaggacattgatcttgattatgctgggcgtcagaaccctacg
gcatcaatacacaaggtattggcagcgcttgaacctggcgacatgctttcgtttaaagct
catgaagatagatatctgattcaggacgccaacggttatgttattggccgcacagcaaaa
tcattcagcctagatcttgatattgaggagtgtgaagtggcggctgttttggttcggcgt
tctgaccggtgtgaagagtcgtttcgagcttatcatcgttcgcaagagtgggagctagtc
gtgccgagaatcgctggccgggtcgtaatgagcgatacataa
DBGET
integrated database retrieval system
