Pseudomonas syringae pv. syringae B728a: Psyr_3619
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Entry
Psyr_3619 CDS
T00246
Name
(GenBank) Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_3619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_3619
03009 Ribosome biogenesis [BR:
psb03009
]
Psyr_3619
Enzymes [BR:
psb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Psyr_3619
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psyr_3619
Ribosome biogenesis [BR:
psb03009
]
Prokaryotic type
rRNA helicases
Psyr_3619
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AAY38651
UniProt:
Q4ZQC1
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All DBs
Position
complement(4303040..4304713)
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AA seq
557 aa
AA seq
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MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatccaaatatcgttgcagca
gtcgtcgccactggctacgaagagccttcggccattcagcagcaatcgatcccgattatt
ctcgccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gcactgcctatcctgcatcggatcgacccgagcaagcgcgagccgcaagcactgatcctg
gccccgacccgcgaactggcacttcaggttgccaccgcgttcgagacctacgcaaaacaa
atgccgggcgtgaccgttgtagcggtctacggcggcgcgccgatgggccctcagctcaag
gctatccgcaacggcgcacagatcgtcgtcgctaccccgggccgtctctgcgaccacctg
cgtcgtgacgagaaagtcctggcgaccgtgaaccacctggttctcgacgaagcggacgaa
atgctcaagctgggcttcatggacgacctcgaagtcatcttcaaggccatgcctgaaacc
cgccagaccgtactgttctcggccacgctgccacagtcgatccgtgccatcgccgaacgc
catctgcgcgatccgaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctcggccgtactgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgaccctggat
ctggccagtgctcttgaagccaaaggctacaaggctgccgcactgaacggcgacatcgcc
cagaaccagcgcgagcgcgttatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggtcttgacgttccgcgtatcacccacgtcttcaacgtg
gacatgccttacgatccggagtcctacgttcaccgtatcggccgtaccggtcgtgccggt
cgcgaaggtcgcgcactgctgctggtgacgcctcgtgagcgccgcatgctgcaagtgatc
gagcgtgttaccggtcagaaggttgcggaagtccgcctgccggatgcccaggccgttctg
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtcgctgatgccgaatcg
actcacggtgatctgctcgatcgtctgactgccgacatcggctgcagccctcgcgcgctt
gccgctgcactgctgcgcaaggctaccaacggtcaggcactgaccctggcagccatcgag
cgcgagcgtccactggttccgaacaacgccccgcgcggtgatcgtccagagcgcagcagc
gaccgtggtgatcgtcctgagcgtgagcgtcgtgcgccggttccattggccgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggt
gccattctcaacgaaggcggcctggcccgcgaagcgatcggccgtatccaggtccgtgac
agcttcagcctggtcgaactgccggaagatggtcttgagcgtctgctgaccaagctcaag
gacacccgtgttgctggcaagcagctcaagctgcgtcgctatcgcgaagactga
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