Pseudomonas syringae pv. syringae B728a: Psyr_3836
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Entry
Psyr_3836 CDS
T00246
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb00061
Fatty acid biosynthesis
psb00071
Fatty acid degradation
psb01100
Metabolic pathways
psb01212
Fatty acid metabolism
psb02024
Quorum sensing
psb04146
Peroxisome
Module
psb_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Psyr_3836
00071 Fatty acid degradation
Psyr_3836
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Psyr_3836
09145 Cellular community - prokaryotes
02024 Quorum sensing
Psyr_3836
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
psb01004
]
Psyr_3836
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psb04147
]
Psyr_3836
Enzymes [BR:
psb01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Psyr_3836
Lipid biosynthesis proteins [BR:
psb01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Psyr_3836
Exosome [BR:
psb04147
]
Exosomal proteins
Exosomal proteins of breast milk
Psyr_3836
Exosomal proteins of breast cancer cells
Psyr_3836
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
AAY38866
UniProt:
Q4ZPQ6
LinkDB
All DBs
Position
complement(4571883..4573571)
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AA seq
562 aa
AA seq
DB search
MQADFWDDKRPAGVDAEVDLQTYQSVVDVFERCCRKFADRPAFSNMGVTLTYAELERHSA
AFAAYLQQHTQLVPGDRIAVQMPNILQYPIAVFGAMRAGLTVVNTNPLYTAREMRHQFKD
SGARALVYLNLFGKLVQEVLPDTAIEYLIEVKMGDMQSAAKGWLVNTIVDKVKKMVPEFH
LPQAVGFKRALRLGRDSRMQVVPRGLQDVAVLQYTGGTTGLAKGAMLTHGNLVANMQQVY
ACMRQQGPRGGSLFEEGKEVMIAPLPLYHIYAFTANCMCMMISGNHNILITNPRDIGGFI
KELGKWQFTAMIGLNTLFVALMNHPEFKKLDFSALKSTNSGGTALVKATAERWAQITGCT
IVEGYGLTETSPVASANPYGTMARLGTVGIPVPGTAMKVIDDNGVELPFGERGELCIKGP
QVMKGYWNQPDATAECLDAEGWFKTGDIAVIGADGFVSIVDRKKDLIIVSGFNVYPNEIE
DVVMAHPKVANCACIGVPDERSGEAVKLFVVARDPGLSIEELKAFCKENFTGYKVPRQIV
LRDSLPMTPVGKVLRRELRDIA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctgacttctgggatgacaagcgtccggcgggtgtcgacgccgaggtggatctg
cagacctaccaatcggtcgtcgatgtgttcgagcgctgctgcaggaaattcgccgaccga
cctgcgttcagcaacatgggcgtgacgctgacctacgcggagctcgagcgtcactctgcc
gccttcgccgcgtatttgcagcagcacacgcaactggtgccgggtgaccgcattgccgta
cagatgcccaatatcctgcagtatccgatcgccgtattcggtgcgatgcgtgccggtctg
acggtggtcaataccaacccgctgtacaccgcgcgcgagatgcgccatcaattcaaggac
tccggtgcccgggcgctggtttacctcaacctgttcggcaagctggtgcaggaagtgctg
ccggacacggccatcgaatacctgatcgaagtgaaaatgggcgacatgcagtcggcggcc
aagggctggctggtcaataccatcgtcgacaaggtcaagaagatggtccctgaattccat
ctgcctcaggccgtcggcttcaagcgggcgctgcgcctggggcgtgacagccgcatgcag
gtcgtaccgcgaggtctgcaggatgttgccgttctgcagtacaccggtggcaccacgggg
ctggccaagggcgcgatgctcacccatggcaatctggtcgccaacatgcagcaggtctac
gcctgcatgcgtcagcaagggccgcgaggcggatcgctgtttgaagaaggcaaagaggtg
atgatcgcgccgctgccgctctatcacatctacgcgttcacggcgaactgcatgtgcatg
atgatcagcggcaatcacaacatcctgatcaccaatcctcgcgatatcggcggcttcatc
aaggaactgggcaagtggcagttcaccgccatgatcggcctcaacacgctgttcgtggcg
ctcatgaaccatccggaattcaaaaaactggatttctcggcgctgaaaagcaccaactcc
ggcggcactgcactggtcaaggccacggccgagcgctgggcgcagatcaccggctgcacg
atcgtcgaaggttacggcctgaccgagacgtcgcctgttgccagtgccaatccctacggc
actatggcgcgtctgggaaccgtgggcattcccgtgcccggcaccgccatgaaagtcatc
gatgacaatggcgtcgagttgcctttcggcgagcgtggcgagctgtgcatcaaggggccg
caggtcatgaaaggctactggaaccagcctgatgccacggccgagtgcctggatgccgaa
ggctggttcaagaccggtgatattgccgtgattggcgctgacgggtttgtcagtatcgtc
gaccgcaagaaagacctgatcatcgtgtccggtttcaacgtctaccccaacgaaatcgaa
gacgtggtcatggctcatccgaaagtcgccaactgcgcctgtatcggcgtgccggacgag
cgctcgggggaggctgtgaagctgttcgtggtggcgcgagacccggggctgagcattgaa
gagctcaaggccttctgcaaagagaatttcaccggctacaaggtgcccaggcagatcgtt
ctgcgtgattcattgccgatgaccccggtgggcaaggttctgcgccgcgagcttcgtgac
atcgcctga
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