Pseudomonas syringae pv. syringae B728a: Psyr_4072
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Entry
Psyr_4072 CDS
T00246
Name
(GenBank) Chaperonin Cpn60/TCP-1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_4072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_4072
03110 Chaperones and folding catalysts [BR:
psb03110
]
Psyr_4072
03029 Mitochondrial biogenesis [BR:
psb03029
]
Psyr_4072
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psb04147
]
Psyr_4072
Enzymes [BR:
psb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Psyr_4072
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Psyr_4072
Chaperones and folding catalysts [BR:
psb03110
]
Heat shock proteins
HSP60 / Chaperonin
Psyr_4072
Mitochondrial biogenesis [BR:
psb03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Psyr_4072
Exosome [BR:
psb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Psyr_4072
Exosomal proteins of other body fluids (saliva and urine)
Psyr_4072
Exosomal proteins of breast cancer cells
Psyr_4072
Exosomal proteins of colorectal cancer cells
Psyr_4072
Exosomal proteins of bladder cancer cells
Psyr_4072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AAY39102
UniProt:
Q4ZP20
LinkDB
All DBs
Position
complement(4855526..4857169)
Genome browser
AA seq
547 aa
AA seq
DB search
MAAKEVKFGDSGRKKMLAGVNVLADAVKATLGPKGRNVIIEKSFGAPLITKDGVSVAKEI
ELKDRFENMGAQLVKDVASRANDDAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGI
DKATIAIVAELKKLSKPCTDTKAIAQVGTISANSDHSIGDIIAEAMEKVTKDGVITVEEG
SGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELDSPLLLLVDKKISNIREMLPVLEAV
AKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTV
ISEEIGLSLETTTLEHLGNAKRVILNKENTTIIDGAGVKTDIDSRISQIRQQIGDTSSDY
DKEKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALV
RSLQAIEGLKGDNADQDVGIALLRRAVEAPLRQIVANSGDEPSVVVDKVKQGSGNYGYNA
ASGEYGDMIEMGILDPAKVTRSALQAASSIASLMITTEAMIADVPEDKPAGGGMPDMGGM
GGMGGMM
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaagaagttaaattcggcgattctggccgcaaaaaaatgctcgccggtgta
aacgtcctggctgacgcagttaaagcgaccctgggccctaaaggccgcaacgttatcatc
gagaaaagctttggcgctccgctgatcaccaaagacggtgtttcggttgccaaggaaatc
gagcttaaagaccgtttcgaaaacatgggcgcgcagctggtcaaagacgttgcttcccgt
gccaacgatgatgcaggcgacggtaccactaccgctaccgttctggctcaggccatcgtc
aacgaaggcctgaaggctgtcgctgccggcatgaacccgatggacctcaagcgcggcatc
gacaaggcgaccatcgccattgttgccgagctgaagaagctgtccaagccatgcaccgac
accaaggcaatcgcccaggtcggcaccatctcggccaactctgatcactccatcggcgac
atcattgccgaagccatggaaaaagtgaccaaagacggcgttatcaccgttgaagaaggt
tcgggcctggaaaacgagctgtctgttgtagaaggcatgcagtttgaccgtggttacctg
tccccgtacttcatcaacaagccggacaccatggttgccgagctggacagcccgctgctg
ttgctggtcgacaagaagatctccaacattcgcgaaatgctgccggttctggaagcagtc
gccaaggctggccgtcctctgctgatcgttgccgaagacgttgaaggcgaagcgctggcg
actctggtagtcaacaacatgcgcggtatcgtgaaagttgcagccgtcaaggctccaggt
ttcggcgatcgtcgcaaggccatgctgcaggacatcgctgttctgactggcggtaccgtt
atctccgaagagatcggcctgagcctggaaaccactaccctggaacacctgggtaatgcc
aagcgcgtcatcctgaacaaggaaaacaccaccatcatcgatggtgccggcgtgaaaacc
gatatcgactcgcgtatctcccagatccgtcagcaaatcggcgacaccagctcggactac
gacaaggaaaaactgcaagagcgtctggccaagctgtctggcggcgttgcagtgatcaag
gtcggtgccggttccgaagtcgagatgaaagagaagaaagcccgcgttgaagacgccctg
cacgcaacccgcgcagccgttgaagaaggcgtggtacctggcggtggcgtggcactggtt
cgctcgctgcaggctatcgaaggtctgaaaggcgacaacgctgatcaggacgtcggtatc
gctctgctgcgtcgtgcagtcgaagcgcctctgcgccagatcgttgccaactccggtgac
gagccaagcgttgttgtcgacaaggtcaagcagggttcgggtaactacggttacaacgct
gcttccggcgaatacggcgacatgatcgaaatgggtatccttgacccggccaaagtgact
cgctctgctctgcaggcggcgtcctccatcgccagcttgatgatcaccaccgaagcgatg
atcgctgacgtgcctgaagacaagccagcaggcggcggcatgccggacatgggcggcatg
ggtggtatgggcggcatgatgtaa
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