Pseudomonas syringae pv. syringae B728a: Psyr_4147
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Entry
Psyr_4147 CDS
T00246
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb02020
Two-component system
psb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Psyr_4147
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Psyr_4147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psb03021
]
Psyr_4147
Transcription machinery [BR:
psb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Psyr_4147
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AAY39177
UniProt:
Q4ZNU5
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All DBs
Position
4934535..4936070
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AA seq
511 aa
AA seq
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MAHARRRIRCLAPAMKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPM
LERQEEGDDFDHSDPLADNIEQKPNPDVQEPTYQESAPTVDNLEEGEWNERIPNELPVDT
AWEDIYQTSASSLPSNDDDEWDFTTRTSVGESLQSHLLWQLNVAPMSDKDRLVAVTLIDC
INNQGYLDETLDEILESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQL
PAKTPWLTEAQRLVSDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIES
TEAEYVIPDVIVRKDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEA
RWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTT
QKFMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLL
EAQGIQVARRTVAKYRESLGIAPSSERKRLM
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatgcgcgccggcgaataaggtgtttagcccctgccatgaaaccatcgctagtc
ttgagaatgggccagcagctgacgatgacaccgcagctgcaacaggcaatccgcttactt
cagctttccactctggatctccagcaggagatccaggaggcgctggagtcaaaccctatg
ctggagcggcaggaagaaggcgacgacttcgaccattccgacccgcttgccgacaacatc
gaacaaaagcccaaccccgacgttcaggaaccgacctatcaggaatccgcgcctaccgtg
gacaaccttgaagaaggtgaatggaacgaacgcattcccaacgagctgcccgtcgatacc
gcatgggaagacatctaccagaccagcgccagcagcctgccaagcaacgatgacgacgag
tgggacttcaccacgcgcacctctgtgggcgaaagcctgcaaagccacctgctgtggcaa
ctgaatgtcgcgccgatgtccgacaaggaccgtctggtagcggttacgctgatcgactgc
atcaacaaccagggttatctcgacgagacgctcgatgagattctcgagtccttcgacccc
gaactggacatcgagctcgacgagatcgaagccgtactgcaccgcatccagcagtttgaa
cctgccggcatcggcgctcgcaacctgagcgaatgcctgctgctgcaactgcgccagctg
ccagcaaaaacaccctggctgacagaagcacaacgcctggtcagcgactacatcgacctg
ctcggaagccgcgactacggccagctgatgcgacgcatgaagctcaaggaagacgagctg
cgtcaggtcatcgaactggtgcagagcctcaacccgcgtccaggctcgcagatcgaatcc
acagaagccgaatacgtcattccggatgtgatcgtgcgcaaggacaatgaacgctggctg
gtcgaactcaatcaggagtcggtgccgcgcctgcgcgtcaatccgcaatacgcgggcttc
gtacggcgcgccgataccagcgcagacaacaccttcatgcgcaatcagttgcaggaagcg
cgctggttcatcaagagcctgcaaagccgcaacgaaacgttgatgaaggtcgccacgcaa
atcgtcgaacatcagcgcggctttctcgagtacggtgacgaggccatgaagccgctcgtc
ctgcacgacatcgccgaggcagtgggcatgcacgagtcgaccatctcgcgcgtaaccacc
cagaaattcatgcacaccccacgcggcatttacgagctgaaatacttcttctcaagccat
gtgagcacctccgagggcggtgaatgctcgtccacggcaattcgcgcaatcatcaaaaaa
ctggttgcggcggaaaatcagaaaaagccgttgagtgatagcaagatcgctggtttactg
gaggcacaaggcattcaagtagcccgtcgcacagtcgccaagtaccgtgagtctctcggg
atcgccccttccagtgagcgtaagcggctgatgtga
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