Pseudomonas syringae pv. syringae B728a: Psyr_4176
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Entry
Psyr_4176 CDS
T00246
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_4176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_4176
03016 Transfer RNA biogenesis [BR:
psb03016
]
Psyr_4176
Enzymes [BR:
psb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Psyr_4176
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Psyr_4176
Transfer RNA biogenesis [BR:
psb03016
]
Prokaryotic type
tRNA degradation factors
Psyr_4176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AAY39206
UniProt:
Q4ZNR6
LinkDB
All DBs
Position
complement(4967358..4969463)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA
TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ESKEAAEAARQRVLGITAEAEIGKIYIGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaagtttcagttcggtcaatcgaccgtaaccctcgagacaggc
cgtatcgcccgtcaagcctctggtgcagtattggtcaccgttgacgacgacgtcagcgta
ctcgtgactgtggtcggcgccaaacaggctgacgctggcaaaggcttcttccctctgtcc
gtgcactatcaggaaaaaacctacgctgccggcaagattcctggtggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacttcgcgcctgatcgaccgtccgatccgc
ccgttgtttccagaaggcttcatgaacgaagtgcaggtcgtctgcaccgtcgtctccacc
agcaagaaaatcgatccggacatcgctgcgatgatcggtacttcggctgccctggccatc
tccggtatcccgtttgacggtccggtcggtgctgcccgcgttgctttccacgaaagcacc
ggctacctgttgaacccgacttacgagcagctgcaggcttcgagcctggacatggtcgtt
gccggtacttccgaagccgttctgatggtcgagtcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtgctgttcgcgcatgacgagttccaggtcgtgatcaacgccatc
aaggaactggctgccgaagccgccaagcctacctgggactggcagccaaagcctgaagcg
actgcactgctgggcgctatccgtgccgagttcggcgacgcgatctcccaggcttacacc
atcaccgtcaaagccgaccgctatgcgcgtctgggcgaactgaaagatcaggtcgttgcc
aagctcgctgtcgaagacggcagcccgtctgccagcgaagtcaaagcggctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccgcgtatcgatggtcgt
gacacgcgcaccgttcgtcctctgaacatcgaagtcggcgttctgccgaagactcacggt
tcggcactgttcacccgtggcgaaactcaggcgctggtggttgccacgctgggtactgca
cgtgacgcacagctgctcgataccctcgaaggcgagaagaaagaccccttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggcggcgcaggtcgtcgt
gaaatcggtcacggccgtctggcccgtcgcagtgtccaggccatgctgccaggcgctgac
gtgttcccgtacaccatccgtgtcgtgtcggaaatcaccgagtccaacggctccagctcc
atggcttcggtctgcggtgcttccctggctctgatggacgctggtgtgccgatgaaggcg
ccggttgccggtatcgccatgggtctggtcaaggaaggcgagaagttcgcgattctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtacctcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagagatcatg
gagatcgccctgggccaggccctggaagctcgcctgaatatcctcggccagatgaaccag
atcattggtcagtcgcgtaacgaactgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgtgatcggcaagggtggcgcaaccatccgtgccatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gagtccaaggaagcggctgaggctgcacgtcagcgcgttctgggcatcaccgcagaagcg
gaaatcggcaagatctacatcggcaaggttgagcgcatcgtcgatttcggcgcgttcgtc
aacatcctgccgggtaaggacggtctggttcatatctcgatgctgagcgatgctcgcgta
gagaaagtgaccgacatcctcaaagaaggtcaggaagtcgaagtactggtactggacgtg
gacaaccgcggccgtatcaagctgtcgatcaaggacgtagccgcagcgaaagcgtcgggc
gtctga
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