Pseudomonas syringae pv. syringae B728a: Psyr_4520
Help
Entry
Psyr_4520 CDS
T00246
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psyr_4520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_4520
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psyr_4520
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psyr_4520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
AAA_16
BCA_ABC_TP_C
AAA_23
RsgA_GTPase
AAA_33
AAA_21
DnaJ_CXXCXGXG
Viral_helicase1
nSTAND3
AAA_25
cobW
Motif
Other DBs
NCBI-ProteinID:
AAY39550
UniProt:
Q4ZMS2
LinkDB
All DBs
Position
5384574..5387459
Genome browser
AA seq
961 aa
AA seq
DB search
MARSRILRRLCPPSEAAVDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFD
TLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITE
IYDYLRLLYARVGQPRCPDHDIPLEAQTVSQMVDLVLSQPEGSKLMLLAPVIRERKGEHL
SVFEELRAQGFVRARVNGKLCELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFET
ALKLADGIALVAPMDDEPGEEVIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGL
GVKQFFDIKRLVNAELTLAEGAIRGWDRRNVYYFQMLGSLSKHYGFSLEMPFKQIPADMQ
KILLNGSGSQSVDFRYLNDRGDIVKRAHPFEGIVPNLERRYRETESATVREELAKFLGTQ
PCPDCRGTRLRREARHVWVGEKTLPAVTSLPIGDATHYFETLKLTGRRGEIADKILKEIR
ERLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDN
DRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPDEVMSHP
DSLTGKYLSGRVKIAVPAKRTPRNKKLSLTLKGARGNNLQNVNLDIPIGLLTCVTGVSGS
GKSTLINNTLFPLSATALNGATTLEAATHDSINGLQHLDKVVDIDQSPIGRTPRSNPATY
TGLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCD
VCKSKRYNRETLEVKYKGKNIHEVLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIKLG
QSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNT
VVVIEHNLDVIKTADWLVDLGPEGGSRGGQIIATGTPEQVAEMEQSYTGHYLKPLLTRDK
A
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggctcggagccgtatactccgtcgtttatgcccgccaagcgaggccgcagtggacaag
atcctgatacgtggggcacgaacccacaacctgaaaaatattgacctgacacttccccgc
gacaaactgatcgttatcaccgggctctccggctcaggcaagtcttcgctggctttcgat
acgctgtacgccgaagggcaacgccgctatgtcgaatcgctgtcggcctatgcccgccag
tttctgtcgatgatggaaaaaccggacgtcgatacgatcgaaggtctgtcgccggcgatt
tccatcgagcagaagtctacttcacataacccgcgctcgaccgtgggtacgattaccgaa
atttacgactacctgcgtcttttgtatgcgcgcgtcggccagcctcgctgccccgaccac
gatattccgctggaagcccagacggtcagccagatggtcgacctggtgctgagtcagcct
gagggcagcaaattgatgctgcttgcgccggttatccgcgagcgcaagggtgagcatctt
tcggttttcgaagagctgcgcgcgcaaggctttgtccgggcgcgagtcaacggcaagctg
tgcgagctggatgagctgccgaagctggataagcagaagaagcactcgatcgatgtggtc
gtggaccgtttcaaggtccgcgccgacctgcagcagcgcctggccgagtccttcgagacc
gccctgaagctggccgacggtatcgccctggtggcgccgatggacgacgagccgggcgag
gaagtgatcttctctgcccgcttcgcctgccctatctgtggccatgcgatcagcgagctg
gaaccgaagctgttctccttcaacaacccggctggcgcctgcccgacctgcgacggtctg
ggcgtgaagcagttcttcgatatcaagcggctggtcaatgccgaactgacgcttgccgaa
ggcgcgatacgaggctgggacaggcgtaatgtctattacttccagatgctcggctcgctc
tccaagcactatggcttcagcctggaaatgccattcaagcagatccccgccgacatgcag
aagattctgctcaacggcagtggctcgcagagtgtcgatttccgctacctcaatgaccgt
ggcgatatcgtcaagcgtgcgcacccgttcgaaggcatcgtgccgaatctggagcgtcgc
tatcgggaaaccgaatcggctacggtccgcgaagagctggccaagttcctgggcacacag
ccctgccctgactgccgaggcactcgcctgcgtcgcgaagcgcgccatgtgtgggtgggt
gaaaagactctgcctgcagtcaccagtctgccgattggcgacgcgacgcattacttcgaa
acgctcaagctgaccggacgacgtggcgagatcgccgacaagattctcaaggaaatccgt
gagcgtctgcagtttctggtcaacgtgggcctggactacctgaccctggatcgtagcgca
gacaccctgtccggcggcgaagcacagcgtatccgtctggccagccagatcggtgcgggg
ttggtcggggtgatgtacatcctcgatgagccgtccatcggtctgcaccagcgcgacaac
gatcgtttgctgggcacgctcaagcacctgcgcgacatcggcaatacggtgattgtggtc
gagcacgatgaagatgcgattcgcctggccgactacgtggtcgacatcggcccgggggcc
ggcgtgcatggtggtcatattgtcgccgaaggtacgccggacgaggtgatgtcgcatccc
gactcgctgaccggcaaatacctgtcagggcgcgtgaagattgctgttcctgccaagcgc
accccgcgtaacaagaagctctcgctgaccctcaagggcgcgcgtggcaacaacctgcaa
aacgtcaatctcgacatcccgatcggcctgctgacctgcgtgacgggtgtttccggatcg
ggcaagtcgacgctgatcaacaacacgctgttcccgctgagcgctacggcgctgaacggc
gccacgacgctggaagcggctacgcacgacagcatcaacggcctgcagcacttggacaag
gtggtggacatcgaccagagccctatcggtcgtacgccgcgctccaacccggcgacctac
accgggctgttcacgccgattcgcgagctgttcgccggggttccggaatcacgctcgcgg
ggctatggtccggggcggttctcgttcaacgtcaagggcggacgctgcgaggcgtgccag
ggcgacggcctgatcaaggtcgagatgcactttttgccagacatctacgtgccctgcgac
gtgtgcaagagcaagcgttacaaccgcgaaacgcttgaggtcaagtacaagggcaagaac
atccacgaagtgctggagatgaccatcgaggaagcgcgtgagttcttcgacgccgttccg
gcactggcgcgcaagctgcaaaccctgatggatgtaggactttcctatatcaagctgggg
caatcggcgacgaccctgtcaggcggtgaggcacagcgggtcaagctgtcgcgtgagctg
tccaagcgcgacaccggcaagacgctgtacatcctcgacgagccgaccacaggcctgcac
ttcgcggatattcagcagctgctggatgtattgcatcgcctacgcgaccacggcaatacc
gtggtggtgatcgagcacaatctggatgtgatcaagacggccgactggctggtggacctg
ggtccggaaggcggttcgcgaggtgggcagatcattgcgacgggcacacctgaacaggtc
gccgagatggaacagtcctacaccggtcattacctgaaacctctgttgaccagagacaaa
gcctga
DBGET
integrated database retrieval system
