Pseudomonas syringae pv. syringae B728a: Psyr_5065
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Entry
Psyr_5065 CDS
T00246
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03420
Nucleotide excision repair
psb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psyr_5065
03430 Mismatch repair
Psyr_5065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_5065
Enzymes [BR:
psb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psyr_5065
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psyr_5065
MMR (mismatch excision repair)
Other MMR factors
Psyr_5065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_12
AAA_22
HTH_TIMELESS
Motif
Other DBs
NCBI-ProteinID:
AAY40092
UniProt:
Q4ZL80
LinkDB
All DBs
Position
6008585..6010768
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDD
QQRLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYE
IACQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDTEVIRLEQNYRSTASILKAANGLII
NNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLH
LMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHA
SLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVRLSNSVNRPFGGTP
KFNSSSLFNGTGIPETEFTMGQRVQHAVFGEGVILNFEGAGAQARVQVNFSEGSKWLMMG
YAKLVPL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctctcttcttctgaattccctcaacgatgcccaacgtcaggccgta
gctgcctctctgggtcgtcagttggtcctggctggtgctggctccggcaaaacccgtgtg
ctggtgcatcgcatcgcctggctgatgcaggtcgagcaagcctccccgcattcggtcctg
tcggtgacgttcaccaacaaggccgccgccgagatgcgccaccgtatcgagcagctgatg
ggcatcagcccggctggcatgtgggtgggcaccttccacggtctggcccaccgcctgttg
cgtgcgcactggcaggaagccgggctggtacagaccttccagattctcgacagcgacgac
cagcagcgtctggtaaagcgcgtgatgcgcgagctgggcctggacgaacaacgctggcct
gcacgtcaggcccagtggttcatcaatggtcagaaagacgaaggcctgcgcccgaaacat
attcaggccagcggcgacctgttcctgaccaccatgaaaagcgtttacgaagcctacgag
atcgcctgccaacgggccggcgtcatcgacttctccgaactgctgctacgcgcactcgac
ctgtggcgcgataacccgggcttgctggcgcattatcagcgccgcttccgtcacgttctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggctgcgcctgctcgcccag
gggggcgacagcctgatggtggtcggcgacgacgatcagtccatttacggctggcgtggc
gcgaagatcgagaacatccaccagtattcctcggacttcccggataccgaagtcatccgc
ctggagcagaactaccgctccacggcgagcatcctcaaggccgccaatggcttgatcatc
aataacagtggtcgcctgggcaaggaattgtggaccgacgtcggcgatggcgagctgatc
aatctgtacgccgcgttcaacgagcacgatgaagcgcgttacgtggtcgagaccatcgag
agcgcgctgaaaaccggtatttcgcgcaacgatatcgccattctgtaccgctccaacgcc
cagtcgcgggtgcttgaagaagccctgctgcgtgagcgtattccgtaccgcatctacggc
ggacagcgcttcttcgagcgtgccgaaatcaagaacgccatggcctacatgcgcttgctg
gaaggccgtggcaacgatgcggcactggagcgggtgatcaatgttccggcgcgcggcatc
ggtgaaaagaccgtcgaagcgattcgcgagcatgcgcgtcatgccgacgtctccatgtgg
gaagccatgcgcctgctggtggccaacaagggcctgaccggacgcgccgccactgccctg
ggcggtttcatcgagctgatcgagaacctcgcggccaaggtcatggagatgccgctgcac
ctgatgacccagacggtgatcgaacagtccggactgattacctatcacgagcaggaaaaa
ggcgagaaaggtcaggcgcgggtagaaaaccttgaggaactggtcagcgctgcgcgtgcc
ttcgagaatcacgaaagcgaagaagacctgacgccactggcagcgttcctggggcatgcc
tcgctggaagcgggcgacacccaggcgcaggagcatgaagacagcattcagctgatgacc
ctgcacagcgccaagggcctggaattcccgcatgtgttcctggtgggcatggaggaaggg
ctgttcccgcacaagatgagcctggaagaaccaggccgtcttgaagaggaacggcgtctg
gcctatgtcggcatcacccgggccatgaaacagctggtgatgacctacgccgagacgcgt
cgtctgtacggcagcgaaacctacaacaaggtctcgcgtttcgtacgggagatcccgccg
gcgctgattcaggaagtccggctgtccaacagcgtcaaccgtccgttcggcggcacgccg
aaattcaacagcagcagcctgttcaacggcaccggcattccggaaaccgagttcaccatg
ggccagcgcgtccagcatgcggtgttcggcgaaggcgtgatcctcaacttcgaaggcgct
ggcgcccaggcgcgggtgcaggtcaacttctccgagggcagcaagtggctgatgatgggc
tacgcgaagctggtgccgttgtag
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