Stutzerimonas stutzeri CCUG 29243: A458_19955
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Entry
A458_19955 CDS
T02168
Name
(GenBank) ATP-dependent DNA helicase domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psc
Stutzerimonas stutzeri CCUG 29243
Pathway
psc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A458_19955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psc03019
]
A458_19955
03400 DNA repair and recombination proteins [BR:
psc03400
]
A458_19955
Enzymes [BR:
psc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A458_19955
Messenger RNA biogenesis [BR:
psc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A458_19955
DNA repair and recombination proteins [BR:
psc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A458_19955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFM35206
UniProt:
I4CYP9
LinkDB
All DBs
Position
complement(4275586..4277526)
Genome browser
AA seq
646 aa
AA seq
DB search
MIEQTLRQTFGYDGFRPGQDQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVV
SPLLALMQDQLAFLHRRDIAAASIDSAQSREQASETMARAKSGDLKILMISVERLKNERF
RNFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATPPVIAD
MQAKFSIAPDDVVTTGFYRPNLNLLVEPVSDFNKQRRLVEWLGDKSGQPTIVYVTQQKTA
EQIAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGIDKADIRNVV
HYDLPKSVENYSQEIGRAGRDGNASDCLVLANRDSLSVLQNFVYGDTPEREGIRCVLDEL
LQAAAPDQKGSGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFKYL
LEPEVLIAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRGRVVKALEYFQEK
GWIELESKQMTDVYALLDPDFDAEGLSIELHEYFKQHEASEITRIDNMLALFESSECLSQ
RLAGYFGDLQAPQHCGHCSVCNGQVAKLPEPPAMAPLEQIDLAARCAEFSQRFAQLKGGA
PSAECLTRFLCGISVPVFTKLKARQIPGFASLEAYPYAEVRARLTR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacagaccctcaggcagactttcggctacgacggctttcgtcccggccaggat
caggccattcgcgccgtggtggccgggcgctcggcggccgctatctttcccaccgggtct
ggcaagtccctgtgttatcagctgccggcgctgctattgcctcatctcaccttggtcgtt
tcgccgctgttggcgctgatgcaggaccagctagctttcctgcatcgacgcgacatcgcg
gcggcaagcatcgattcggcgcagagccgcgagcaggccagcgaaaccatggcccgcgcc
aagtccggcgacctgaaaatcctgatgatttcggtggagcggctgaagaacgaacgcttc
cgtaacttcatcagccaggtgccgatctcgctgctggtcgtcgatgaggcgcactgcatc
tccgaatgggggcacaacttccgcccggattacctcaagcttcccgactaccagcgtcaa
ttcaatatcccgcaggtgctgctgctgaccgccacggcgacaccgccggtaatcgccgat
atgcaggccaaattctcgattgcgccggacgacgtggtgactaccggcttctaccggccc
aacctcaatctgctggtggagccggtcagcgacttcaacaagcagcgccggttggtggaa
tggctgggcgacaagagcggccagcccaccatcgtctacgtcacccagcagaagaccgcc
gaacagattgccgagcacctggcgcagcgcggcttcccggccagcgcctatcacgcgggt
atggcgcacgagctgcgcgaatcgatccagcgccgcttcatggcgggcgagctgaactgc
atcgtcgctaccatcgccttcggcatgggcatcgacaaggcggacatccgcaacgtggtg
cactacgacctgcccaagtcggtggaaaattacagtcaggaaatcggtcgggcagggcgc
gacggcaatgcttcggattgtctggtgctggccaaccgggacagcctcagcgtgctgcag
aattttgtctatggcgacacaccggagcgcgagggcatccgctgcgtgctcgacgagctg
ctgcaggcggctgctcctgatcaaaagggcagcggacaatgggagctgatgctcaaccag
ctatcggaccagagcaacatccgccagctgccgttgaaaaccctgctggtgcagctggag
ctgcgcggcatcatcgcgccacgcttcgcctatttcgccgaataccgcttcaagtacctg
ctcgaacccgaggtgctgatcgcgaaattcgaaggtgagcggcggcagttcgtcgaggcc
atcgtgcacagctcggcgcgggcaaggacctggtgcacgctggatttcgatgcgctctac
cagcagcacggtgcggaccgtgggcgggtggtaaaggccctggagtacttccaggaaaag
ggctggatcgagctggagagcaagcagatgaccgacgtctatgcgctgctcgatccagac
ttcgacgcagagggcttgagcatcgaactgcatgaatacttcaagcagcacgaagcgagc
gagatcacccgcatcgacaacatgttggcgctgttcgaatccagtgaatgcctgagccag
cggttggccgggtatttcggtgacttgcaggcgccgcagcactgcgggcattgctctgtc
tgcaacggacaggtcgcgaaactgccggaaccgccggcaatggcgccgctggaacagatt
gacctggccgcccgctgcgccgaattcagtcagcgcttcgcgcagctgaagggcggtgcg
cccagcgccgagtgcctgacgcgctttctctgcggcatcagcgtgccggtgttcaccaag
ctcaaggcgcgccagatcccaggcttcgcctcgctggaggcttatccctacgccgaggtt
cgcgcgcgcctgacgcgttag
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