Pseudoalteromonas sp. CF6-2: L3Q70_09290
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Entry
L3Q70_09290 CDS
T11185
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pscf Pseudoalteromonas sp. CF6-2
Pathway
pscf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3Q70_09290 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscf03019
]
L3Q70_09290 (rne)
03009 Ribosome biogenesis [BR:
pscf03009
]
L3Q70_09290 (rne)
Enzymes [BR:
pscf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L3Q70_09290 (rne)
Messenger RNA biogenesis [BR:
pscf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3Q70_09290 (rne)
Ribosome biogenesis [BR:
pscf03009
]
Prokaryotic type
rRNA processing factors
L3Q70_09290 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Cementoin
Glutenin_hmw
Motif
Other DBs
NCBI-ProteinID:
UJX24234
LinkDB
All DBs
Position
2002706..2005852
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIARTYFPQGYTFQGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSRLELPKGMGLIVRTAGVGKSFEEL
EYDLKALLVHWEAIQQAADSGPAPFLIHQESNVIFRAIRDYLRRDIGEILIDKARVFEEA
KAHIERFRPDFMSRVKLYQGDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLLEEEAIKDNTSQVNAQVPVAVAAYLLNEKRRSVHRIEKRHNVDVVIIPNQHLETP
HYEVVRLRKDETIETVSYEQVVAPEPESFEMAKSPSAPVREEPVLKGVVMPTTPAPQAAP
KAEQPAPVVKKPEGGLFAAIGKFFKSLFSNAEDEAEKEQEEKKAAQRRSNNRRNNDNRRR
SNNQRRRNSRNKRPDDAQAKEESTNTSNKPEQKEGNENRNKRRRNSNNRKRNEKRNDDVE
QTTKDTAQEKPSEQPKETKPKVRRQRRNLRKKVRVTDESADEANTVHTTTETVEQAAKAE
KPAKPVKEAVAVETEQAEQPVAEKQAPTEPVKADTEPKQAEQAESVVETSTEEEQAQPRT
RSRRSPRHLRAAGQRRRRPEHDEKSSDEKTDAPAFIPVADQAAAEYEAELKAKQAQTEEP
VKAEEPVKAEESVKAEKPAKTEEPVKTEEPVKAEEPVKAEEPVKTEEPVKAEEPVQAEEP
VKTEEPVKAEEPVQAEEPVQAEEPVQAEEPVQAEEPVQAAEPVQAEEPVQAEEPVQAEEP
VKAEEPVKTEESAQAEQPAKNEKTILVKGSASAVMAKPAPVADSEPEPTPAAMAHDKRVT
IPDSGLRAGSIKPAGKASAEMAKTMLVD
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcgacgcagcaagaagaaatgcgtgttgcactggttgat
ggccagcgcctatatgatttagatatcgaaagcccaggtcacgaacaaaaaaaagccaac
atttacaagggtaaaatcacccgtatcgaaccatctcttgaagcagccttcgttgattat
ggcgctgaaagacatggttttctaccattaaaagagatcgcacgtacttacttcccgcaa
ggttatactttccaaggtcgtccgaatattcgtgacgtaattaaagaaggtcaggaagtt
atcgtccaagttgataaagaagaacgtggccaaaaaggtgctgcgttaacaacctttatc
agcgttgctggtagctacttggtactgatgccaaacaacccgcgtgctggtggtatttca
cgccgtatcgagggtgacgagcgtactgaattaaaagaagcactaagccgtttagaatta
ccgaaaggcatgggcttaattgttcgtacagccggtgtgggtaaatcatttgaagaactt
gagtacgatttaaaagcactgttagttcattgggaagcaattcagcaagctgccgatagc
ggccctgctccatttttaatccaccaagaaagcaacgttattttccgcgctattcgtgac
tatctacgtcgtgatattggtgagattttaattgataaagcacgcgtatttgaagaagca
aaagcgcacattgaacgcttccgccctgacttcatgagccgtgtgaaactgtatcaaggt
gatgtgcctttattcacgcattaccaaatcgaaagccaaattgaatcagccttccaacgc
gaagttcgcttaccgtcaggtggctcaattgttattgacccaacagaagcattaacatct
atcgatatcaactcatcaaaagccacaaaaggcggcgatatcgaagaaactgcgcttaat
acaaacttagaagcggctgacgagattgcccgtcaattacgtttacgtgatttaggtggt
cttattgttattgatttcatcgatatgactccacctcgtcaccaacgtgaagttgaaaac
cgtttaaaagatgcggcgcgtccagaccgtgctcgcgtacaaattggtaagatctctcgc
tttggtctacttgaaatgtcacgtcaacgcttacgtccatcattaggtgaagcaagccaa
ggtccttgtcctcgttgtagcggccaaggtactattcgctcaaatgagtctattgccctt
tcaattcttcgtttacttgaagaagaagcgattaaagacaacacatcgcaagtgaatgcg
caagtacctgttgctgttgccgcttatttgttaaatgaaaagcgccgtagcgttcaccgt
attgaaaagcgccataatgttgatgtcgtaattattccaaatcagcatttagaaacacct
cattatgaagtggttcgcttacgtaaagatgaaacgattgaaaccgtaagctacgaacaa
gtcgttgcgcctgaaccagaatcattcgagatggctaagtcaccttctgcacctgttcgt
gaagagcctgtgttgaaaggtgtggttatgcctacaacaccagctcctcaagcggcacca
aaagctgagcaaccggctcctgtagttaagaaacctgaaggtggtttatttgctgcgatt
ggtaagttcttcaagtcgttattcagcaatgccgaagatgaagcagaaaaagagcaagaa
gagaaaaaagcagcgcaaagacgtagcaataatcgtcgcaacaacgacaaccgtcgtcgt
agtaacaatcaacgtcgtcgcaattctcgtaataaacgtcctgatgatgcgcaagctaaa
gaagaaagcacaaacacttcgaataagcctgagcaaaaagaaggcaacgagaatcgcaac
aagcgtcgtcgtaattctaacaacagaaaacgtaatgaaaaacgtaatgacgatgtagaa
caaacgacaaaagacactgcccaagaaaagccatctgagcaaccaaaagagacaaagcct
aaggttcgtcgtcaacgtcgtaacttacgcaaaaaagttcgcgtaacagacgaaagcgca
gatgaagcaaatacagtacacactacgactgaaacagttgagcaagcagctaaagctgag
aaaccagctaagcctgtaaaagaagctgtagctgttgagactgaacaggcagaacaacct
gttgctgaaaagcaagcacctacagaacctgtaaaagctgacactgagcctaaacaagct
gagcaagctgaatcagtggttgaaacatcaactgaagaagagcaagcccaaccacgtact
cgctctcgtcgttcgccgcgtcaccttcgtgccgctggtcaacgtcgtcgtcgcccagag
cacgatgaaaaatcgagtgatgagaaaactgatgcaccagcattcatcccagttgcagat
caagctgctgctgaatacgaagctgaactaaaggcaaagcaagctcaaactgaagaacca
gtaaaagctgaagagccagtgaaagctgaagagtcagtgaaagctgaaaagccagcgaaa
actgaagaaccagttaaaactgaagaaccagtgaaagctgaagagccagtaaaagctgaa
gaaccagtgaaaactgaagaaccagtaaaagctgaagagccagtacaagctgaagagcca
gtgaaaactgaagaaccagtaaaagctgaagagccagtacaagctgaagagccagtacaa
gctgaagagccagtacaagctgaagaaccagtacaagctgaagaaccagttcaagctgca
gaaccagtacaagctgaagaaccagtacaagctgaagagccagtacaagctgaagaacca
gtgaaagctgaagaaccagtaaaaacggaagagtcagcacaagctgaacagcctgctaaa
aatgagaaaacaattttagtgaaaggttcagcaagcgctgtaatggctaaacctgcacca
gttgcagatagtgagccagagcctactccagcggcaatggcacatgataaacgtgttact
attccagacagtggcctgcgtgctggttcaatcaagcctgcaggaaaagcgagtgctgaa
atggcgaaaacaatgctagtagactaa
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