Pseudoalteromonas sp. CF6-2: L3Q70_09430
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Entry
L3Q70_09430 CDS
T11185
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pscf Pseudoalteromonas sp. CF6-2
Pathway
pscf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pscf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L3Q70_09430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pscf03400
]
L3Q70_09430 (mfd)
Enzymes [BR:
pscf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3Q70_09430 (mfd)
DNA repair and recombination proteins [BR:
pscf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L3Q70_09430 (mfd)
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GFIT
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NCBI-ProteinID:
UJX24262
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Position
2035264..2038737
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AA seq
1157 aa
AA seq
DB search
MAFAQWAALPWVKSEKDKIQWGQLTGSGLSIAIAEGVKQHNELVVIVTPDTPSALRLETE
LEFLLPENPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPVSTLMLRT
APASFIYGSTLNFKVGDTLDTHTLRENLEQAGYLHVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDSIRLFDVESQRSDEKVDKIELLPAHEFPTNDADIERFRINYREHFGA
SSEQDSIYMQVTKGTWPAGIEYYMPLFFDGLATIFDYLPSNTTFMHFGDIEHAADQFWHD
VNVRYENRRVDPLRPLLEPVKLYQSVNELFGEFAKYARIRLSQAKLGTKAGHTNLASKEL
PNVRIDHKLHEPYQGLIDYVASEKKQKGRVLLSVESDGRRESLLTLLKPSGLKLKEFESF
SDFTNSTSDVGLIVSPLEQSVVLDGKPRLTIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELREGQPIVHLDHGVGRYQGLETIDAAGVITEFVTIIYANEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAKRQAKPGNKFKLDGSAYR
QFSDSFPFEETDDQRNAIESVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAVLVPTTLLAQQHYENFKDRFADLPIEVGVLSRFNSTKEQKDTLDRMAEGKLDIVIGTH
KLIQQDIQFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDAELIREAILREIKRGGQVYFLHNNVETIDRVAEEITE
WVPEASVTTAHGQMRERELEQIMSDFYHQKYNVIVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGNPKSLTKDAVKRLEAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNSLKEGKEPTLENLLGQQTEVDLKLPAL
LPDDYIHDVNARLGIYKRIASCANLNDMDELQVELIDRFGLLPDATKNLFSLQQLKLQAS
HIGIKKIEANPKGGYFEFSQHTKVNPSFIIGLIQSAPQVYKMDGANKLRFAISEANPRER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcgcaatgggcagcattgccttgggtaaaatctgaaaaagataaaattcaa
tgggggcaacttaccggtagcggtcttagcatcgccatcgcagaaggtgtaaaacaacac
aacgagttggttgtgattgtcacccctgatacgccaagtgccctacgccttgaaactgaa
ctcgaatttctgttgcctgaaaacccagtcatggtcttccctgactgggaaacactgcct
tatgatcatttttcgccgcatcaagatattatttcggcgcgcttagccacgttaaatacc
ttaaaaaaagaacaacaaagtgtattaatcgtgccagtgtcaaccttaatgctgcgtaca
gcccctgcttcgtttatttatggttcaacccttaactttaaagtgggcgataccctagat
actcatacactgcgtgaaaacttagaacaagcgggctatttacatgtacaacaagtgatg
gagcatggtgaatacgcgattcgcggctctatcgttgacctataccctatgggtagcccg
cacccatttcgtttagacttttttgatgatgagctcgacagcattcgtttatttgatgtt
gaaagccaacgttcagatgaaaaggtcgacaaaattgagttactgccagctcacgaattc
ccaaccaacgatgctgacattgagcgttttcgtattaattatcgtgaacattttggcgca
agctctgagcaagactcaatttatatgcaggttaccaaaggaacctggcctgcgggtatc
gaatattacatgccactgttttttgatggactggcaactattttcgattacttaccaagc
aatacgacgtttatgcattttggcgatatagaacatgcagctgatcaattttggcatgat
gtgaatgtacgctatgaaaaccgccgtgttgatccgctcaggcctttacttgaacctgta
aagctctatcaaagcgttaatgaactatttggtgaatttgctaaatacgcacgtattcgt
ttatcgcaagcaaagttaggcaccaaagcagggcatacaaaccttgccagtaaagaactg
ccgaatgtgcgtattgatcataagttacatgaaccgtatcaaggtttaattgactatgtt
gccagcgagaaaaaacaaaaaggccgcgtgctgctctctgttgaatcggatggccgccgc
gaatcattactcaccttattaaaaccaagtggtttaaagcttaaagaatttgaatcgttt
agcgattttaccaatagtaccagtgatgttggccttatcgtttcaccacttgagcaaagt
gtggtgttagacggtaaaccgcgtttaaccatcattacagagcaagaattattaggcatc
aaggtttcgcagcgacgacgccgtaaacacaaatacgaagccagccaagatgcgcttatt
cgtaaccttgctgaattacgtgaaggccaaccaattgttcaccttgaccatggtgtcggc
cgctatcaaggccttgaaactatcgatgctgcgggtgtgatcaccgagtttgttacgatc
atctacgccaacgaggcaaaactatacgtgcccgtttctgcgttacatatgctgagccgc
tattcaggtggcgaagaagcctctgccccgctccataaattaggctccgatgcgtgggaa
aaagccaagaaacgtgccgccgagaaagtccgtgatgtggctgctgagctattagatatt
tacgctaaacgacaagcaaagcccggcaataaatttaagcttgatggcagtgcatatcgt
cagtttagcgatagcttcccatttgaagaaactgacgatcaacgcaacgccatagagtct
gtgctgggtgatatgcaaagtaaacaagcaatggaccgtttagtgtgtggtgacgttggc
tttggtaaaacagaagtggcaatgcgcgcagcctttgttgcagtaaatgataataagcaa
gtcgctgtacttgtcccaaccacactgcttgctcaacaacactatgaaaactttaaagac
cgttttgccgatttacccattgaggtgggtgttttatcacgttttaactcaaccaaagag
cagaaagataccctagatagaatggccgagggtaaattagatatcgtaattggtacgcac
aagcttattcaacaagatattcaatttaaagacttgggattattgattgttgatgaagaa
catcgctttggtgtgcgccaaaaagaaaaaattaaagcattacgtgccgatgtcgatatt
ttaacgctcactgcaacccctatcccacgtacattaaacatggcaatgagtggcatgcgt
gacttatccattattgccacaccgcctgcgaaacgtttagccgttaaaacctttgttaga
caaagagatgctgaacttatccgcgaagcaattctgcgtgagattaaacgtggtggtcag
gtgtatttcttacataataatgttgaaacgatcgaccgagttgcggaagaaatcactgaa
tgggtacctgaagccagcgtaacaacggcacatggtcaaatgcgagagcgcgagcttgag
caaattatgagtgatttttatcaccaaaaatataacgtgattgtgtgtaccaccattatc
gaaaccggtatcgatgtacccactgccaacactattattatggatagagcagacaagctc
ggtctggcacagcttcaccaattgcgtggtcgtgttggccgtagccaccaccaagcgtat
gcctacctactgactggcaaccccaaatcgttaactaaagatgccgttaagcgcctagaa
gcaattgaatcactggaagatctaggtgcaggttttgcgctcgcaacgcatgatttagaa
attcgtggtgctggtgaactgctcggtgatgatcaatcaggtcaaatgcaaaccattggt
tttagtttgtatatggagatgcttgaacaggcggtcaactcgctcaaagaaggcaaagag
ccaacccttgaaaacttgctcggccagcaaactgaggttgacttaaagctaccagcgtta
ttacccgatgattatattcatgatgtaaatgcacgtttaggtatctataaacgcattgca
agctgtgctaacctcaatgatatggacgagttacaagtcgagctgattgaccgttttggt
ctgctgcctgacgcgacgaaaaacttattcagtctgcagcaattaaaactacaagcaagt
catattggtattaagaagattgaagcaaacccgaaaggcggctattttgagtttagccag
catacaaaggttaaccctagcttcattataggtttgatacaaagtgcaccgcaggtgtat
aaaatggatggcgcaaacaaactgcgctttgctattagcgaggcaaatcctcgtgaacgc
ttaaaaatggtcactgcaatgattgcagatttcgaaaaaaaggttagccattaa
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