Pseudoalteromonas sp. CF6-2: L3Q70_09590
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Entry
L3Q70_09590 CDS
T11185
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pscf Pseudoalteromonas sp. CF6-2
Pathway
pscf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pscf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
L3Q70_09590 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pscf03400
]
L3Q70_09590 (recB)
Enzymes [BR:
pscf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
L3Q70_09590 (recB)
DNA repair and recombination proteins [BR:
pscf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L3Q70_09590 (recB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UJX24294
LinkDB
All DBs
Position
complement(2070403..2073978)
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AA seq
1191 aa
AA seq
DB search
MQTLNPMSMALCGQSLIEASAGTGKTYTITGLYLRYLLGLQKATDEDEQLNTPLSVEQIL
VVTFTEAATQEIKDRVRARIINARDALLGKKPDDELIEQVIDEVTDKHAAFDLLDAAAKS
MDEAAIFTIHGFCQRMLKQHAFESGVAFNLEFILDERELIQETLNDFWRAFVYPQSKERT
QAITDIFPVPASLYSQVVSLLNKQGATITPEYDLDDIWQARDNFVAKVPAFKKACLESEF
INAVKASDLSGSKTPGRKNSLAALEEYLNNDELFFVFGTNKYSFEVWSTENLSDPANYKK
NGNLLSHEMVAQFGEMAKLSSLINNGLNIAIVQYAAKWVANALVKRKQEQGVITPDDLLS
NLHQALLSEQGQALSEKIAALFPVAMIDEFQDTDPIQYGIFSRIYGIKNTTLAMIGDPKQ
AIYGFRGADIFTYIGAKEAVAKDKQYTLDTNYRSSEGVVDSVNRLFAKNDNSFIYNDAIP
FQKVNAKGKQQDKAFLINGEMPSAFEFSVFVDEYAEANNKPTSKGVAQQALALQYTKKIT
DLLKQADAGYATIAGKPLTAADICVLVRDRNEAQLMKTALAEAAIASVYLSRDSVFNQEL
SHHLLNFLTALHGQYDESLLRGVLAGPLFCLSYNRIYQLHENESAWQEHLNFFAQLAHIW
HKQGAMAMLERLLSHNQLAARWQGLGYNVERWLTDFRHLGEILQQKQIELEGTHRLLRWF
AQKVSQQDGEAVQVRLESDANLVKIVTMHASKGLEYPIVFMPFACGYRESKEALYHKDGK
LIYDLAKSDDAMQKAEQERLAEDLRLLYVALTRAVHFCSVGMYNIALGRSARPGIQSTSI
GHVLFAGLEIKSGDEWRALLQQFCEGSAHMHYEAFSQADELEKLTFAGAANEQEYQVNTV
KADIQRDWRSTSFSSLTLKKHTDHIELGRSDEDHEKDEFLAQNANALTPYSFPKGAKPGS
CLHEIFEQLDFTDPYALKRPASEQEDHALDKVIKTLFEKYHIDDSWQEMSEQWILAALNC
PLNDKGLSLSVLEPDTCLVEMEFNLPLLSLSSDRLNQVLVKHFNLPGQLDFSEVQGLLKG
FIDLIFCWQGKYYILDYKSNFLGNSAADYQHEQLEQAMTSHQYHLQYLIYTVALHRLLKQ
RIQDYDSDTHLGGVYYTFLRGMSEGQGVYFNQLTKQQITELDSLFAQGAML
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgcttaatccaatgagtatggcgctatgtgggcagagccttattgaagccagt
gccggtacgggtaaaacctacaccatcacaggtttgtatttacggtatttgttgggttta
caaaaagcgactgatgaagatgaacaattaaatacgccgcttagtgttgagcaaatactg
gtggtgaccttcaccgaggccgcaacgcaagaaattaaagaccgtgtgcgggcgcgtata
atcaatgccagagatgcactgcttggtaaaaagcccgatgatgagctgattgagcaagta
attgacgaggtaactgacaaacacgccgcatttgatttgctagacgctgcggcaaagtcg
atggatgaagccgccatattcaccattcatggcttttgtcagcgaatgcttaaacaacat
gcttttgaatcaggtgtggcgtttaacttagagtttattttagatgagcgtgagcttatt
caagaaacccttaatgacttttggcgtgcctttgtctacccacaatcaaaagagcgcacc
caagcaattaccgatattttcccagtgcctgcatcactgtattcacaggtagtgagttta
ctcaacaagcaaggggcaacaatcacccctgagtacgaccttgacgatatatggcaagcg
cgcgacaactttgtggcaaaagtaccggcatttaaaaaggcatgccttgagagtgagttt
attaatgctgtaaaagcatctgatttaagtggctcaaaaaccccaggtcgaaaaaacagc
cttgcagcgcttgaagaataccttaacaatgacgagctgttctttgtatttggtaccaat
aaatactcctttgaagtgtggagtacagagaatttaagcgaccctgcaaattacaagaaa
aacggcaatttgcttagtcatgaaatggtggctcagtttggtgaaatggccaaactcagt
agccttatcaataacggattgaatattgcgatagtgcaatacgctgctaaatgggtggca
aatgcattagttaagcgcaagcaagagcaaggcgtgatcacccctgatgatttattaagt
aacctgcatcaggcgcttttaagcgagcaagggcaagcattaagtgaaaaaattgccgcc
ttgtttccggttgccatgattgacgaattccaagataccgatccaattcaatacggcatt
tttagccgcatttatggcattaaaaacaccacccttgccatgataggtgacccaaaacag
gctatttatggtttccgtggtgcagatatttttacttatattggcgcaaaagaagctgtt
gcgaaagataaacaatacaccctagataccaactaccgctcaagtgaaggggttgttgat
agcgtaaaccgcttatttgctaaaaatgacaatagctttatttataacgacgcaatccca
tttcaaaaggtcaatgctaagggaaaacagcaagacaaagcgtttttaataaacggtgaa
atgcccagtgcgtttgagttttcggtttttgttgatgaatacgccgaagcgaacaataag
ccaaccagcaaaggggtggctcaacaagcattggctttgcagtatacgaaaaaaatcact
gatctactcaagcaagctgatgccggctatgcgactatcgcaggaaaaccactcaccgct
gccgatatctgtgtgttagtgcgtgaccgaaacgaagcacagttgatgaaaaccgcactg
gcagaagccgccattgccagcgtgtatttgtcgcgtgatagtgtgtttaaccaagagctt
agtcatcatttacttaactttttaacggcattgcatggtcagtatgatgagtcattattg
cgcggtgtacttgctgggccattgttttgcttaagctacaaccgcatttatcagcttcac
gaaaatgaaagcgcatggcaagagcatttaaacttttttgctcagctagcccatatttgg
cataaacagggcgctatggcgatgctcgagcgtttattgagtcataatcaacttgcagcg
cgttggcaaggcttaggctacaacgttgagcgctggctcaccgatttccgccatttaggg
gaaatcttacagcaaaagcaaattgagcttgagggaacccatagattgctgcgttggttt
gcgcaaaaagtcagtcaacaagatggcgaagcagtgcaagtacgcctagaaagcgatgct
aatttagtgaaaattgtcaccatgcacgcatcaaaaggcttagagtacccgatagtattc
atgccgtttgcctgtggttatcgcgaaagcaaagaagccctttatcataaagacggtaag
ctgatttatgaccttgctaaaagtgacgatgcaatgcaaaaagccgagcaagagcgcttg
gctgaagatttacgcttgctctatgtggcattgactcgtgctgtgcatttttgttcagtg
gggatgtacaacattgcactaggtcgcagcgctcgcccaggtattcaaagtaccagcatt
ggccacgtattattcgcagggttagagattaaatcgggcgatgaatggcgcgcattgtta
caacaattttgtgaaggctctgcgcacatgcactatgaggcgtttagccaagcagatgag
ctagaaaagttaacatttgctggtgcagccaatgagcaagaatatcaagttaatactgtt
aaagcagacattcagcgtgattggcgctcaaccagctttagtagcttaacactgaaaaag
catactgatcatatcgagcttggtcgcagtgatgaagaccacgaaaaagatgagttttta
gcccaaaatgccaatgctttaacaccttacagcttccctaaaggggcaaagccgggtagt
tgtttgcatgaaatttttgagcaattagactttaccgacccttacgcgttaaagcgtcca
gccagtgaacaagaagaccatgcacttgataaagtgatcaaaacgttattcgaaaaatac
catattgatgatagctggcaggaaatgagcgagcagtggatccttgctgcactgaattgc
ccattaaacgataaaggacttagtttatcagtacttgagcctgatacctgtttggtcgaa
atggaatttaacttaccgctgttatcgctctcaagcgataggctaaaccaagtgttggta
aaacattttaacttacccgggcagcttgattttagtgaggtgcaaggcttactaaaaggc
tttatcgatttaatattttgctggcagggtaagtattatattcttgattataaatcgaac
tttttaggcaatagtgcggctgactaccaacatgagcaactagagcaagccatgaccagt
catcagtatcatttgcagtatttgatatacaccgtggcattgcaccgtttattaaaacaa
cgtattcaagactacgatagcgatacgcatttaggcggtgtttactacaccttcttacgt
ggtatgagcgaagggcaaggggtgtattttaatcagctaacaaaacagcaaataactgag
cttgatagcttattcgcacaaggagccatgctatga
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integrated database retrieval system
