Pseudoalteromonas sp. CF6-2: L3Q70_09980
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Entry
L3Q70_09980 CDS
T11185
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pscf Pseudoalteromonas sp. CF6-2
Brite
KEGG Orthology (KO) [BR:
pscf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pscf03000
]
L3Q70_09980
Transcription factors [BR:
pscf03000
]
Prokaryotic type
Helix-turn-helix
Other families
L3Q70_09980
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA_2
AAA
HTH_23
HTH_7
HTH_50
HTH_28
Motif
Other DBs
NCBI-ProteinID:
UJX27195
LinkDB
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Position
complement(2149714..2151693)
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AA seq
659 aa
AA seq
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MKHTPHPMDVSSAQSFMSTEFQLRNIQPSKYIARSWKRSLLNYGLDPYASNEVEVLSSSE
MRSQLQLRETFLNTGKCGLVGLANRIADAGYSAILTDATGLTLATSLSTQEESLSKQSGL
LIGARWAENQVGTNGIGTCLIEKAPLIIHKAEHFYASHKELSCSVTPIFDPMGDLLGCLN
ASCIGADPNKHHQLMTLKMVMLYGRMIENSYLHTSYKNQLILSIKSAESFFDITQEQLIA
INEKGTIIGANHAAFFCFMSHFQSHQSLLGINVEQFIGLSLDSLLSKTNGGNNAVNVQLP
LLSENVEITLKVPKSKALPLVQAEPKVQSKTFTKHPPINELNGEDASMQQLVRRALLVAD
KDIPIMITGETGTGKEAFARAIHESSPRADKPFVALNCAAIPETLIESELFGYLGGSFTG
AHKKGMKGKLEQANGGTLFLDEIGDMPVQLQTRLLRVLAERETMPLGGIEPIALDLQVIS
ATHQDLKTLIELKEFREDFYYRLNGMVLKLPALRERSDKSFIIDNILERECVAVHGLSIA
DDAKRALESYYWPGNIRQLISVIKYAVAVCEGAEITINCFPDDLIEHFSSLTDHKTVGSF
KKEKALAKFTACHEEQLLIETLKKHRWNITSVSEELNVCRSTVYRKMEKYKIVQPNNAC
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacactccacaccctatggacgttagtagtgctcagtcgtttatgtccacagaa
tttcaactacgtaacattcaaccatctaaatatatcgcgcgatcatggaagcgaagtttg
ctcaattatggcttagatccctatgcgtctaatgaagttgaggtactttcttccagcgaa
atgcgatcgcaactccagcttagagagacctttttaaatacggggaaatgcggccttgtt
ggtttagctaatcgtattgctgatgccggctactctgcaattttaactgatgccacaggc
ttaaccttagcaacgagtttatctactcaagaggaaagtttgagtaagcaatcaggccta
cttattggtgcaaggtgggctgaaaaccaagtaggtacaaatggtattggcacatgtctt
attgaaaaagcccctttgatcattcataaggctgaacatttttatgcaagtcataaagag
ttaagttgctccgttacacctatttttgatcccatgggagacttgctgggttgcttaaac
gcgtcgtgtattggcgctgacccaaataagcaccatcagcttatgacactcaaaatggtg
atgttatatgggcgcatgattgaaaatagctatttgcatacaagctataaaaaccaactc
atattaagtataaagtcggctgaaagtttttttgatatcacccaagagcaactcatcgcg
attaatgagaaaggtacaattattggtgcaaatcacgcggcatttttttgttttatgtct
cattttcaatcgcatcaatcgttgctaggtattaatgttgagcaatttattggtttgtct
cttgatagtttactaagtaaaacaaatggaggaaataatgcggttaatgtgcaacttcca
ttgctgtcagaaaacgtcgaaataaccttaaaggtgccaaaaagtaaggcattgccattg
gtacaagcagagccaaaagtgcagagtaagacattcactaaacatccgccgattaatgaa
ttgaatggtgaagatgcctctatgcagcagcttgttcgtagggcacttttggtcgctgat
aaagacatacctattatgattaccggtgagacaggaacaggcaaagaggcttttgcgcgc
gccattcatgaatcgagtccccgtgctgataaaccatttgtggcgcttaactgtgccgcg
atacctgaaacactaatagagagtgagttgtttggttatctcggcggtagctttacgggg
gcacacaaaaaaggtatgaaaggtaagcttgagcaggcaaatggcggcacacttttctta
gatgaaataggtgatatgccggtacaacttcaaactcggctattacgagttttagctgag
cgcgaaactatgcctcttggggggattgagcctatcgcattagatttacaagtgatttct
gcaacacaccaagatctaaaaacacttattgaattaaaagagtttagagaggatttttat
tatcgtcttaacggtatggttttaaagttaccagcacttcgagaacggtctgataaatcc
tttattattgataacatactcgaacgagaatgcgtggcggtgcatggtttgagcatagcc
gatgatgctaaaagagcacttgaatcttattattggcctggcaatataagacaactgatt
agcgtaattaagtatgcggtagctgtgtgtgaaggagctgaaataaccattaattgcttt
ccagatgatttaatcgaacacttttcttcacttacagatcataaaacggtgggctctttt
aaaaaggaaaaagccttggctaaatttactgcctgccatgaagagcaattactaattgaa
acgcttaaaaaacatcgttggaatataacgtctgtttctgaagagcttaatgtgtgccgt
tctacagtgtataggaaaatggaaaagtataagattgttcagcctaataatgcttgctaa
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