Pseudoalteromonas sp. CF6-2: L3Q70_10835
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Entry
L3Q70_10835 CDS
T11185
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pscf Pseudoalteromonas sp. CF6-2
Pathway
pscf03030
DNA replication
pscf03430
Mismatch repair
pscf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pscf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3Q70_10835 (dnaE)
03430 Mismatch repair
L3Q70_10835 (dnaE)
03440 Homologous recombination
L3Q70_10835 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pscf03032
]
L3Q70_10835 (dnaE)
03400 DNA repair and recombination proteins [BR:
pscf03400
]
L3Q70_10835 (dnaE)
Enzymes [BR:
pscf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L3Q70_10835 (dnaE)
DNA replication proteins [BR:
pscf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L3Q70_10835 (dnaE)
DNA repair and recombination proteins [BR:
pscf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L3Q70_10835 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UJX24497
LinkDB
All DBs
Position
complement(2331337..2334828)
Genome browser
AA seq
1163 aa
AA seq
DB search
MPTPQFVHLRVHSDFSMVDGLAKTKPIVAKAEELQMPALAITDQMNLCGLVRFYGAAHGA
GIKPIVGADFWLRSPEFEDEPCRITILAKDNDGYKNLTLLISKAYQRGHLFHRPVIDREW
LVELKDGLIILSGAKDGDLGKALLKGNAGLIESVVSFYKQHFSDHYYLELIRTERPLEED
YLHLAVELAAQEQLPVVATNEVVFLKPENFEAHEIRVAIHDGYTLEDKRRPKRFSDQQYL
KTAEQMAELFSDIPEALENTVEIAKRCNVTVQLGTYFLPDYPTGSLKIEDFLVKVSEDGL
EERLQFLFPDEQERKEKRGEYDERLKIELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFCMDRRDEVIDHVAA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPGMTLAKAFDVEPR
LQEAYDGDEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLAREGKEPVDINAIPLDDKPSIELL
LRAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
LSYPDVQWQHDSLIPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHYPA
EFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYKFTVNRQGEIVYGIGAIKG
VGEAPVEAILEARSEGGAFKDLFDFCARVDLKRLNKRVVEKLIYAGALDQLGPDKTQPGR
ATLLASLKDAMRAADQHHKAESLGQADLFGLLATEPDEVEQAFIKATGLTDNEWLDGEKE
TLGLYLTGHPINQYRKELRHYTSGRLVDLQPTNRDVQSTAAGLVINARTLINKKGNRWGL
VTLDDKSARIDVRLFPEQFEMYQDMLQVNNILVISGQVSFDNFSGGITMTARDICTIAQA
REKRIKAIKMTLNMVQIEANFFDNLQKVLEPYKFGTCPIKVFYQRPDALAEITLGTEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgccgcaatttgtccacttacgtgttcactccgacttctcaatggtggatggt
cttgctaaaactaaaccaatagttgcaaaggctgaagagttacaaatgcctgcgctggca
atcaccgatcaaatgaacttatgtggtttggtgcgtttttatggtgctgcccatggcgcg
ggtattaaacctattgttggcgctgatttttggctaagaagccctgagtttgaagatgaa
ccatgtcgtataaccatattagcgaaagataatgatggctataaaaatctcacattattg
atttctaaggcgtatcaacgcgggcatttatttcatcgcccagttattgatcgtgaatgg
ttagttgaactaaaagacggcttgattattctctctggcgcgaaagacggcgatttaggt
aaagcactgcttaaaggtaatgcagggcttattgagtcagtagtaagcttttataaacag
catttcagcgatcattactaccttgaattaattcgaacagagcgcccattagaagaagat
tatttacacctagccgtagagcttgccgcacaagagcagttacctgtggtggcaacgaac
gaagtggtgtttttaaaaccagaaaactttgaagctcacgaaattcgcgtagcaattcat
gatggttacacgcttgaagataagcgcagacctaaacgcttttcagatcagcaatatcta
aaaacagcggagcaaatggctgagctatttagtgatattcctgaagcgttggaaaacact
gtggaaattgccaaacgctgtaatgtaaccgtgcagctaggaacttacttcttaccagat
tacccaaccggttcgctgaaaattgaagacttcttggttaaggtctctgaagatggtctt
gaagagcgtttacagtttttattcccagatgagcaagagcgaaaagaaaaacgtggcgag
tatgacgagcgtctgaaaatagagctcgacgtaatcaaccaaatgggtttccctggttac
ttcttgatcgtaatggagttcattcaatggagtaaagataacaatattccggtaggtcct
gggcgtggttcaggtgccggctcattggtggcttacgcgctgaaaattaccgaccttgat
ccgctcgaatttgacttactattcgaacgtttcttgaaccctgaacgtatttcaatgccc
gatttcgacgttgatttctgtatggataggcgcgatgaggtaatagatcacgtagcggcg
ctttatggtcgtgacgcggtatctcagattattacctttggtaccatggctgcaaaagcg
gttatccgtgacgtaggccgtgtacttggtcacccttacggctttgttgatcgtatttcg
aaattagtaccgggcgatccgggtatgaccttggctaaagcctttgatgttgagccgcgg
ttacaagaagcctacgacggtgatgaggaagtaaaagaacttattgatatgtgtcgcatc
cttgaagggtgtacacgtaatgccggtaagcacgctggtggtgttgtaatatcaccaaca
acgattactgattttgccgccctttattgtgatgatgagggtaaattcccagtcactcaa
tttgataaaaatgacgttgagacggcgggtttagttaagtttgacttcttaggtctaaga
acacttactatcttgcagtgggcgcttgatatgaccaacgagcgtctcgcccgtgagggt
aaagagccagttgatatcaacgccattccacttgatgataagccaagtattgagttactg
ctacgcgccgaaacgaccgcggtattccagttagaatctcgtggtatgaaagatcttatt
cgtcgtctaaagcccgactgcttcgaagatatgatcgcactggtagcactattccgccca
ggtccattgcaatcaggcatggtagataactttatcgaccgtaagcatggtcgagaagag
ttatcttatccagatgtgcagtggcaacacgatagcttgataccgattctagaaccgacc
tacggtatcattctttatcaagagcaggtaatgcagattgctcaggtactggctggctat
acactaggtggcgctgacatgctgcgtcgtgcgatgggtaagaaaaagccagaggagatg
gcaaagcaacgttcaaccttcgaagaaggagctgttaataacggagttgacggcgaactt
gcaatgaaaatcttcgacttggtagagaagttcgcaggttacggtttcaacaaatctcac
tctgctgcatatgctttagtgtcgtatcaaacgctgtggatgaaaactcattacccagca
gagtttatggctgcggtaatgtcggcggatatggataacaccgataaaatcgttaccttg
gttgatgaatgtgaaaacatgaaactaaccttgttaccgcctgatgtgaatgcgggtgag
tacaagtttacggttaaccgacaaggtgagattgtatacggtattggcgccattaaagga
gtaggtgaagcgcctgttgaagccattttagaagcgcgaagtgaaggtggggctttcaaa
gacttatttgatttttgtgcgcgagtagatttaaaacgcttaaataaacgcgtggttgaa
aaacttatttatgccggtgcacttgaccaattaggaccagataaaacccagccaggtcgt
gcgactttattagccagcttaaaagatgccatgcgagcggcggatcagcatcataaggct
gagtcactagggcaggccgatttatttgggttattagccacagagcctgatgaagttgaa
caagcatttataaaagcaacaggtttaactgataacgaatggcttgatggcgaaaaagaa
acattgggactttatttaactggtcatcctataaatcagtatagaaaagagctaagacac
tacacatcgggccgtctggttgacttacaaccaacaaaccgcgatgtgcagtcaacggct
gctggccttgttattaatgcacgaacccttattaataaaaaaggaaatcggtggggtctt
gtaactttagatgacaagagtgcccgtattgatgtacgcttattcccagaacagtttgaa
atgtaccaagatatgctacaagttaataatatcttggtgatatctggacaggtcagcttt
gataacttctccggtggcattacaatgaccgctagagacatatgcaccattgctcaagcg
cgagaaaaacgtattaaagcgattaaaatgacgttgaatatggtgcaaatcgaggcgaac
ttcttcgataatttacaaaaagtactggaaccttataagtttggtacttgtcctataaaa
gtattctatcaacgtccggatgcgttggctgagattaccttaggaaccgaatggtgtgtt
acgcctagtgatgacttaattcataagttatcactgatggcggcgcaagatgtagaacta
gaatttaattaa
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