Pseudoalteromonas sp. CF6-2: L3Q70_11295
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Entry
L3Q70_11295 CDS
T11185
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pscf Pseudoalteromonas sp. CF6-2
Pathway
pscf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3Q70_11295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscf03019
]
L3Q70_11295
03009 Ribosome biogenesis [BR:
pscf03009
]
L3Q70_11295
Enzymes [BR:
pscf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L3Q70_11295
Messenger RNA biogenesis [BR:
pscf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3Q70_11295
Ribosome biogenesis [BR:
pscf03009
]
Prokaryotic type
rRNA helicases
L3Q70_11295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrD-helicase
CMS1
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UJX24579
LinkDB
All DBs
Position
2427859..2429679
Genome browser
AA seq
606 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFESLQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNEPEQVHISARNSTVSTVEQVFWNAHVHKNKAIVRFLEA
EQYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKNGLVDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVDLPTAKVVEEKRIKALQDKLTIALENKDITFFNQVAANMAEKLELSFEDLA
GALLCLAQQQSPIKVEEVKVQPRGERSERSDRRRNERGDRGDRAGRERKPREPRERNSRS
MGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKDVL
DHFQKVFICKRPMNMTLTQDQGPAAPRSERPSGDRGDKKRSFKDKDRGEKRGGPRKERRP
VSFTSN
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaatccttaaagcagtt
gaagagttgggttacaagactccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcgcaaacgggtacaggtaaaacagcagcatttgca
ctgccgttactaaataatattgacccgtctgtaaaacagccacagatccttgttttaacg
cctacgcgtgaacttgcgatccaagtagctgaggcattcgaacaatatgctaagcatact
cgtggagttgaagttttagccctatatggcggccaaagctacagcatccaattaagtgca
cttcgtcgtggcgcgcaaattattgttgcaacgccaggtcgcttaatcgaccacattaac
cgtggtaccatcaagtttgagagcttacaagcgcttgttcttgatgaagcagacgaaatg
ttacgcatgggctttatcgatgatgttgaaagcatcatggaaaaaacaccgcgtgaaaag
caaacatgccttttctctgcgaccatgcctaagcaaatccaaaatatcagtagcaaatac
atgaatgagcctgagcaagttcatatctctgctcgtaactcaactgtatctactgttgag
caagtattttggaatgcacatgtacataaaaacaaagctatcgttcgcttcttagaagct
gaacaatacgatggtgcaattgttttcgtacgtacacgtaacgacactgtacagttagct
gaattacttgagcgcgaaggtttctctgcggcaccacttaatggtgacatgaaccaacaa
gcacgtgagcgcacagtagaccgtttgaaaaacggcctagttgatatcgttattgcaaca
gacgttgctgcacgtggtcttgatgtagaccgtttaagcttagtaatcaactacgatatt
ccacaagactcagaagcctacgttcaccgtattgggcgtactggtcgtgcgggtcgtaca
ggtaaagcgattcttttcgtaaaacataacgagcgttatttacttaaaaatatcattcgt
catacgaagtcagagatcgcacaagttgatttaccaacagcaaaagtagttgaagaaaaa
cgtattaaagcgcttcaagataaactcactattgcacttgaaaacaaagatatcaccttc
tttaatcaagtggccgctaacatggctgaaaaacttgaactaagctttgaagatttagct
ggtgcgctactttgtttggcacagcaacaatcaccgatcaaagttgaagaagttaaagtt
caaccgcgtggtgagcgtagcgaacgtagcgatcgtcgtcgtaacgaacgtggtgatcgt
ggcgaccgtgctggacgtgagcgtaaacctcgtgagccgcgtgaacgcaacagccgtagt
atgggtcctatggacacttaccgtatcgaagtcggtcgtgagcacggtgtacaagttaag
aacattgtaggcgcgattgctaacgaagctgatatttcaagcaagttcattggtgatatc
cgcttacacgacagtcacagtactgtgcaattaccacagaacatgccaaaagatgtgctt
gatcacttccaaaaggtatttatctgtaaacgtcctatgaatatgacgctaacgcaagac
caaggtcctgcggctcctcgctctgaacgcccaagcggtgatcgtggtgacaaaaagcgc
agcttcaaagacaaagatcgtggtgaaaaacgtggcggcccacgtaaagagcgccgtcca
gtgagcttcacatcgaactaa
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