Pseudoalteromonas sp. CF6-2: L3Q70_13895
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Entry
L3Q70_13895 CDS
T11185
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pscf Pseudoalteromonas sp. CF6-2
Pathway
pscf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3Q70_13895 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscf03019
]
L3Q70_13895 (rnr)
03016 Transfer RNA biogenesis [BR:
pscf03016
]
L3Q70_13895 (rnr)
Enzymes [BR:
pscf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L3Q70_13895 (rnr)
Messenger RNA biogenesis [BR:
pscf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3Q70_13895 (rnr)
Transfer RNA biogenesis [BR:
pscf03016
]
Prokaryotic type
tRNA degradation factors
L3Q70_13895 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
VOZ_N
TyeA
SecA_SW
Motif
Other DBs
NCBI-ProteinID:
UJX25067
LinkDB
All DBs
Position
complement(3009387..3011870)
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AA seq
827 aa
AA seq
DB search
MSKQDPNLSREQEKYENPVPSREFILTHLESRAKPANFTQLCDELQVNDTERQIAFKRRL
RAMERDGQLYFNKFKCYALIDESGLVKGKVIGHRDGFGFLEVEGESKDWFIAKHQMNMVL
HGDIVLAKGNRKGSSGKCEARIIKVLTNERAPIVGRYFVEHGIAVVVAEDPRITQDIMIL
PGSENGARHNQMVQVQITQNPSRHMNAVGKVTEVLGEHLAPGMEIEVALRNHDIPHVWPE
AVEKQVAHLGEFVDEQAKQGRVDLRDLPLVTIDGEDARDFDDAVYCERKPSGGWRLWVAI
ADVSHYVGMNTPLNKEAIERGNSVYFPEQVIPMLPKVLSNGLCSLNPEVDRLCMVAEMTV
SDAGKLSGYKFYEAVMNSHARFTYTKVNAILQGDEKLREDYAEMVPHLTDLQQMYMALKA
ARQERGAIEFETLETRFVFNAHRKIESIVPVVRNDAHKLIEECMILANVSAARLLEKHEA
SALYRVHDEPDAEKLGFFRNFLSELGIETAISDEPTPKEITQVLAKLGDRPEAELIQTML
LRSMKQAVYQPDNIGHFGLALPAYAHFTSPIRRYPDLVVHRAIKAVLKAQGQQTSGEYAY
TDDEVDMLGEQCSTTERRADDATREVADWLKCEFMQDHVGDEFGGVISSVTNFGLFVRLD
DLQIDGMIHVTNLGNEYFHYDGAKHCLIGEQTHTVYRLGDKLTVQVSSVSLDERRINLVL
AGEAQQDRYARRRGRSAPAKPSVRAQLKAGKIPGKKSESSRFEAKSGDKDNEKRGKSSPS
KGRKKPSSKKADAVKASNKKSKKKATKKAKRPGKNARKRNGRGANNT
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaggatcccaatctcagtcgagagcaagaaaagtacgaaaaccccgtccct
agccgtgagtttatacttactcacttagaatctcgcgctaaaccagcaaacttcacacaa
ctttgtgacgaattacaggtgaatgatacagagcgtcaaattgcgttcaaacgtcgttta
cgtgcaatggagcgcgatggtcaactgtatttcaataagtttaaatgctacgcattgata
gatgaatcaggcctcgttaaaggcaaggtcattggtcatcgtgacggattcggcttttta
gaagttgaaggtgagagtaaagattggtttatcgcaaagcaccaaatgaatatggtgttg
cacggtgacattgtgcttgctaaaggcaatcgcaaaggttcaagtggcaaatgcgaagca
cgtattattaaagtattaactaatgaacgcgcgcccatcgtcggccgttattttgttgag
catggtatcgccgttgttgtggcggaagacccacgcataacgcaagatattatgatactg
cccggcagtgaaaatggcgcgcgccataatcaaatggtgcaggtgcaaattacccaaaac
ccaagccgacatatgaatgcagtgggcaaagtcaccgaagttctcggtgaacacttagca
ccagggatggaaattgaagttgcactgcgtaatcacgatattccccatgtgtggccagaa
gcggttgaaaagcaagttgctcatttaggggaatttgttgatgagcaagcaaagcaaggt
cgtgtagatttacgtgacttaccactggttactatcgacggtgaggatgcccgtgacttt
gacgatgccgtttattgtgagcgtaaaccatcgggtggttggcgtttgtgggtagccatt
gccgatgtgtcgcattatgtaggtatgaacacaccactgaataaagaagcgatcgagcgt
ggtaactcagtgtatttccctgagcaagttattccgatgctgccaaaagtattatccaat
ggcttatgctcattaaacccagaagttgaccgtttatgtatggttgcagagatgacggtg
tctgatgcgggtaagttgtctggctataagttttacgaagcagtgatgaactcacacgct
cgttttacctacactaaagtgaatgcgattttacaaggcgatgaaaagctgcgtgaagac
tatgccgagatggtgccgcacttaactgacttacagcaaatgtatatggcacttaaagct
gcacgccaagagcgtggtgcgattgagtttgaaaccttagaaacacgttttgtgtttaat
gcacaccgtaagattgaatcaatcgtgcctgtggtgcgcaatgatgcgcacaaacttatc
gaagagtgcatgattttagcgaacgtatcggcagcccgattattagaaaaacacgaggcg
agtgcgctatatcgtgtgcatgatgaaccggatgctgaaaagcttggttttttcagaaac
tttttatcagagcttggtatcgaaaccgcgatttctgatgagccaacaccaaaagaaata
acccaagtgttagcaaaattaggcgaccgccctgaagctgagcttattcaaaccatgttg
ctacgctcaatgaagcaagcggtttatcagcctgataatattggtcactttggattagcg
ttacctgcttacgcccactttacatcgccaattcgtcgttaccctgatttagtggtacac
cgtgcaattaaagctgtgcttaaagcgcaaggccagcaaacatcgggtgagtacgcatac
actgatgacgaagttgatatgttaggtgagcagtgttcaaccactgaacgccgtgctgat
gacgcaactcgcgaagtagcagattggcttaaatgtgaatttatgcaagaccatgttggt
gacgaatttggtggggtgatctcatcggtgactaactttgggttgtttgtgcgtttagac
gatttacaaatcgatggcatgatccacgtaaccaacttaggcaatgaatatttccattac
gatggtgctaagcattgcttgattggtgagcaaacccacactgtttatcgtttaggcgat
aaattaacggttcaggtatcatctgtcagtcttgatgagcgacgcataaacttagtgtta
gcaggcgaagcacagcaagaccgttatgcccgtcgtcgtggccgtagcgcccctgcaaaa
ccaagtgttcgtgcccagctaaaagcaggtaaaattcctggtaaaaaatctgaatcaagt
cgctttgaagcaaaatcaggcgataaagacaacgaaaaacgtggcaagtcttctccttct
aaagggcgcaaaaagccaagtagtaaaaaagctgatgcagtaaaagccagtaacaaaaag
agtaagaaaaaagccactaaaaaggcaaaaagaccgggtaagaatgcccgtaaacgtaat
ggccgaggagcaaataatacgtga
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