Prevotella scopos: J4856_05770
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Entry
J4856_05770 CDS
T08373
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pscj
Prevotella scopos
Pathway
pscj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4856_05770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscj03019
]
J4856_05770
03009 Ribosome biogenesis [BR:
pscj03009
]
J4856_05770
Enzymes [BR:
pscj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4856_05770
Messenger RNA biogenesis [BR:
pscj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4856_05770
Ribosome biogenesis [BR:
pscj03009
]
Prokaryotic type
rRNA helicases
J4856_05770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
RecG_N
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QUB45664
LinkDB
All DBs
Position
2:81127..83049
Genome browser
AA seq
640 aa
AA seq
DB search
MKTFEELGVSEEIRRAISELGFENPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP
LLQRIDTSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQLR
HGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT
LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLALKRLVDFY
PKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILVATD
VAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNIERE
ISKEFVDGTLPSPEEICKKQLFKTMDDILKTDVDEDQIAPYMKDINRQFEYIDKEVVIKK
IVSATFGRFLDYYKNAQEIEKPSSRSAREDSRGARGEGRGSRSRGPRKAESGYKRLFINL
GKADGFYPGEVMQFINKNVHGKQAVGHIDLLAKQSYIEVPEQDAQKVMQSLDGATYKGRK
VRCNDAEEGGHGRSSNGRSAGGNGRSAGSRGGYGSRGEGRQESRERKGRGRRQYDENSFG
GQHKFKKDDWKELMKGSPAKLKGDEPDFSEEGWARRRPKK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacatttgaagagttaggtgtgagcgaagagattcgtcgcgccattagtgagctt
ggatttgaaaatccaatgcctgtacaagaagaagtaatcccttatttacttggtaatcgt
aacgacgtcatcgcactggcacagactggtacgggtaagacggctgcattcggtttgcct
ttgctgcaacgtattgatacaagcagcaaggagacgcaggctatcgtgctgagtcctacg
cgtgaactttgtttgcagattgccgatgacctaaaggaattcagtaagtatatccctcat
ctacatatcgcagctgtctatggtggtgcatctattgatacacagattcgccagttgcgc
catggtgtacagattatcgtggctacaccgggccgactaatagaccttatgcaccgtggg
aaggctcgccttgacaaggttagaaacgttgttttggacgaggctgacgagatgctgaac
atgggtttccaagagagtatcactgaaatattgaccggtgtacctgaagatcgtaacaca
ttgttgttctcggctacgatgagtcgtgaggtagagcgtgttgcaaagggttatctacat
gactataaagagattgtagtgggtagccgtaacgagggtgctgagagtgtaaaccatatt
tattatatggtgaatgcacgcgacaagtaccttgccttgaagcgattggttgacttctat
ccaaagatttatgcgattgtattctgccgtacaaaggttgagacacaggagattgctgac
aagttgattaaggacggatataatgccgaggcgttgcatggcgacctctcgcagcagcag
cgtgacctcacgatgcagaagttccgctcacatctcacacagattctcgtggcaacagac
gttgcagcacgtggattggatgtgaacgacttgacacacgttatcaactatggtctgcct
gatgatatcgagaactatacccaccgctctggccgtacgggtcgtgcaggcaagaagggt
acttctatctcgattattcactcacgtgagaaatataaggtacgtaatattgaacgcgaa
atcagtaaagagtttgttgacggaacactaccttcaccagaggaaatctgcaagaagcag
ctgtttaagacaatggatgacatcctgaagacagacgttgatgaggaccagattgcacct
tacatgaaggatatcaaccgccaattcgagtatatcgataaggaggttgtcatcaagaag
attgtttctgcaaccttcggtcgcttccttgactattataagaatgctcaggagatcgag
aagccatcgtcacgtagtgcacgtgaagatagccgtggcgcaagaggcgaaggcagagga
agccgcagccgtggtccacgtaaggcggagagtggttataagcgactctttatcaatctc
ggtaaggcagatggtttctatccgggtgaggtgatgcagttcatcaataagaatgtacat
ggtaagcaggcagtaggacatatcgacctccttgctaagcagagctacatcgaagtgcca
gagcaggatgctcagaaagtgatgcagtcattggacggtgcaacctataaaggtcgtaag
gtgcgttgtaacgatgctgaagaaggtggtcacggtcgctcatctaatggtcgttcagca
ggtggcaatggtcgctctgcaggcagtcgtggtggttacggcagccgtggcgagggtcgt
caggagtctcgtgagcgcaagggccgtggtcgtcgccagtatgatgagaattctttcgga
ggacagcataagttcaagaaagatgattggaaggaacttatgaagggtagcccagctaag
ctaaagggcgatgaaccagacttctctgaggaaggttgggcaagacgcagaccaaagaag
taa
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