Prevotella scopos: J4856_06800
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Entry
J4856_06800 CDS
T08373
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pscj
Prevotella scopos
Pathway
pscj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pscj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J4856_06800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pscj03021
]
J4856_06800 (rpoC)
03400 DNA repair and recombination proteins [BR:
pscj03400
]
J4856_06800 (rpoC)
Enzymes [BR:
pscj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J4856_06800 (rpoC)
Transcription machinery [BR:
pscj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J4856_06800 (rpoC)
DNA repair and recombination proteins [BR:
pscj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J4856_06800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QUB45849
LinkDB
All DBs
Position
2:361041..365411
Genome browser
AA seq
1456 aa
AA seq
DB search
MAFKKDNKVKSNFSKITIGLASPEEILENSFGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERAGHIELVVPVAHIWYFRSLPNKI
GYLLGMPTKKLDAVIYYEKYVVIQPGVVEGMKNAETDEDLNGSHKFDLLSEDEYLDILDN
KLPEGNERLDDSDPSKFIAKMGAEAIYDLLQNIDLDRLAGELRDRATTDSSQQRKTEALK
RLQVVEGFRQSIGVNRPEWMIMKIIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRNN
RLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKQGR
FRQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSA
KKIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAF
NADFDGDQMAVHLPLSNEAILETQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKIR
PGAKGEGLTFYGAEEAIIAFNEKRCNLHAQVKVIVDDLVDGKIQKRMVETSVGRVIVNQM
IPTEIGFFNGIISKKSLRGLIADVIKAVGMARACEFLDGIKNLGYRMAYVAGLSFNLDDI
IVPDEKKDIVGKGQGEVDQVKANYEMGFITDKERYNQVIDAWTHVNNNLKEAVMKHMTEA
DQGFNAVYMMLDSGARGSADQIAQLAGMRGLMAKPQKAGAEGAQIIENPIISNFKEGMSV
LEYFIASHGARKGLADTAMKTADAGYLTRRLVDVSHDVIINEEDCGSLRGLECRALKNGD
EVIASLYERILGRVSVHDVINPSTGDILVAAGEEITEAKAQAIENSPIEMVEIRSVLTCE
SKKGVCKKCYGRNLATARMVQMGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAGNAAANAT
ITAKNDAKIVFDELRTVPYVDDDEKECQMVVSRLAEIRFVDPNTGIVLLTDNVPYGSSLY
FKSGDTVKKGDLICKWDPFNAVIVSEYAGILRLHDVIEGVTYKAETDDATGLTERIIIDS
RDKTKLPTVDIVKVGAKKGPDGLYAPSDILGTYNLPVGGHLEQVVLDGAEMKTGMTLVKI
PRSVGGAGDITGGLPRVTELFEARNPSNPAVVSEIDGEITMGKVKRGNREIIVTSKTGEQ
RKYLVSLSKQILVQEHDAVRAGTPLSDGIITPADILSIMGPTAVQEYIVNEVQDVYRLQG
VKINDKHFEIIVRQMMRKVRIDDPGDTTFLEQELIDKLDFAEENDRIWGKKVVTDPGDSE
NCYKGQILSVRKLRDENSSLKRRDLKLVQVRDAVQATATQILQGITRAALGTKSFMSAAS
FQETTKVLNEAALRGKSDNLEGMKENVICGHLIPAGTGLRQWQKLIVGSQEEHERMEANK
KNILDFSKQEAEATQE
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaagaaagataataaagtaaagagtaatttcagcaaaattactatcggactg
gcttcacctgaggagattcttgagaactcttttggtgaagtaaccaagccagagacgatc
aattaccgtacctataaaccagaacgtgatggtttgttctgcgagcgtatctttggtcca
acaaaggattatgagtgtgcctgcggtaagtacaagcgtatccgttataaaggtatcgta
tgtgatcgttgtggtgttgaggtaacagaaaagaaggtgcgtcgtgagcgcgctggacac
attgaactggttgttcctgttgcacatatttggtatttccgtagtcttcctaataagatt
ggctatctcctcggtatgccaaccaagaaacttgatgctgttatctactacgagaaatat
gttgtcatccagccgggtgtcgtagaaggtatgaagaatgctgagactgatgaggatttg
aatggttctcataagttcgaccttctttcagaagatgagtaccttgatatccttgacaat
aagctccctgagggtaatgaacgcttagacgattctgatcctagtaagtttattgcaaag
atgggtgcagaggctatctacgacctccttcaaaatatcgacttggatcgtttagctggc
gagttacgtgatcgtgcaacaactgattctagccaacagcgtaagacagaagctttgaag
cgtctgcaggtcgttgaaggtttccgccagtcaataggcgtgaatagaccagagtggatg
attatgaagattatccctgttactccaccagaacttcgtccattagtaccattggatggt
ggtcgctttgcaacctctgacctcaacgatctctatcgtcgcgttatcatccgtaacaat
cgtttgaagcgtttgatggagattaaggctcctgaggttattctccgtaatgagaagcgt
atgcttcaggaagctgttgattcactcttcgataatagtcgtaagtcatcggctgttaag
agcgagagtaatcgtcctctgaagtcactctcagattctttgaagggtaagcaaggacgt
ttccgtcagaacctcctcggtaagcgtgttgactattctgcgcgttcagtaatcgttgtt
ggtcctgagttgaagatgggcgagtgtggtctgcctaagttgatggcagcagagctctat
aagccattcattattcgcaagctcattgagcgtggtattgtgaaaacggttaagagtgcc
aagaagattgttgatcgtcgtgaaccggtaatttgggatatccttgagaatgtaatgaag
ggtcacccagtaatgttgaaccgtgccccgacacttcaccgtcttggtatccaggcattc
caacctaagcttatcgagggtaaggctatccagttgcacccattggcatgtacagcgttc
aatgctgactttgatggtgaccagatggctgtccacctcccattaagtaatgaggctata
ttggaaactcagattttgatgctccagagccacaacattcttaaccctgctaatggtgcg
cctatcaccgttccttcacaagacatggtgcttggtctctattatatcacaaagattcgt
ccaggtgctaagggagaaggtcttacgttttacggtgctgaagaagcaatcattgctttc
aatgagaagagatgtaatcttcatgcccaggttaaggtaatcgttgatgacctcgttgat
ggtaagatccagaagcgtatggttgaaacatctgttggtcgtgttatcgttaatcagatg
attccaaccgagatcggattcttcaatggtattatttcaaagaaatcactccgtggtctt
attgctgatgttattaaggctgtcggtatggcacgtgcttgtgagttccttgatggtatc
aagaatcttggttaccgaatggcttatgttgctggtctttcatttaaccttgatgatatc
atcgttccggatgagaagaaagacatcgtaggtaagggacagggcgaagttgatcaggtg
aaggctaactatgagatgggtttcattactgataaggagcgttataatcaggttattgat
gcatggacacacgtaaataacaatcttaaggaggctgttatgaagcacatgacagaggct
gaccagggctttaacgcagtatatatgatgctcgactctggtgcccgtggttctgctgac
cagattgctcagcttgctggtatgcgtggtcttatggcaaagccacagaaagcaggtgct
gaaggtgctcagattattgagaacccaattatctctaactttaaggaaggtatgtctgtg
ttggagtactttattgcttctcatggtgctcgtaagggtcttgccgatacggctatgaag
actgccgatgctggatacctaacccgtcgtcttgttgatgtttctcatgatgttattatc
aacgaggaagattgtggctcactccgtggcctcgagtgtcgtgccttgaagaatggtgat
gaggttattgcaagtctttatgagcgtatcttaggccgtgtttctgttcacgatgttatc
aatccttctactggtgacattctcgttgcagcaggtgaggagattacagaagcaaaggca
caggctatagaaaactctcctattgagatggttgaaatccgttctgtactcacttgtgaa
agcaagaaaggtgtatgtaagaagtgttacggacgtaaccttgctactgcacgtatggta
cagatgggtgaggctgttggtgtaattgctgcacaggcaattggtgagccaggtacacag
cttacacttcgtacgttccacgccggcggtgtggctggtaatgctgcagccaatgcaact
attacagccaagaatgatgctaagattgtgtttgacgaacttcgtaccgtaccatacgtt
gacgatgatgagaaggagtgtcagatggttgttagccgtttggctgaaatccgcttcgtt
gatcctaacactggtatcgtactccttactgataacgtaccttatggtagttcactttac
ttcaagtctggtgatactgttaagaagggtgatttgatctgtaagtgggacccattcaac
gctgttattgttagtgagtatgctggtatccttcgtcttcacgatgttattgagggcgtt
acttacaaggcagagaccgatgatgcaacaggtcttactgagcgtatcatcatcgactca
cgcgataagacaaaactgccaacagttgatattgttaaggttggtgctaagaaggggcct
gatggtctttatgctccatctgatatcctcggaacatataaccttcctgtaggtggtcac
ttagagcaggttgtactcgatggtgctgagatgaagacgggtatgacactcgttaagatt
ccgcgttcagttggtggtgccggtgacattactggtggtcttccacgtgttactgagctc
ttcgaggctcgtaacccatctaacccagctgtcgtttctgaaatcgatggcgagattaca
atgggtaaggtgaaacgtggtaaccgcgagattatcgtgacctctaagactggtgagcaa
cgtaagtaccttgtaagcttgtctaagcagattcttgtacaggaacatgatgctgttcgt
gcgggtactccattgtccgatggtattatcactccagctgatatcctgtctatcatgggt
ccaacagctgttcaggagtatattgttaatgaggttcaggacgtatatcgtttacaaggt
gtgaagatcaatgacaaacactttgagattatcgttcgtcagatgatgcgtaaggtacgt
attgacgatccaggtgatacaacattccttgagcaagaacttattgataaactagacttc
gctgaggagaatgatcgtatctggggcaagaaggttgttaccgatccaggcgactcagag
aattgctataaggggcaaattctttctgtacgcaagttgcgtgacgagaactcaagcctt
aagcgtcgtgacctcaaactcgttcaggtacgtgatgctgttcaagcaacagctacccag
attcttcagggtatcacacgtgctgccctcggtactaagagctttatgagtgctgcttcc
ttccaggagacaacaaaggtacttaacgaggctgctctccgtggcaagagcgataacctt
gaaggcatgaaggagaacgtaatctgcggtcacctcatcccagctggtacaggtcttcgc
cagtggcagaaacttatcgttggttctcaagaggaacatgagcgtatggaagcaaataag
aagaacattcttgacttctctaagcaagaggcagaggctacacaagagtaa
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integrated database retrieval system
