Prevotella scopos: J4856_07005
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Entry
J4856_07005 CDS
T08373
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pscj
Prevotella scopos
Pathway
pscj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pscj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J4856_07005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pscj03021
]
J4856_07005
03400 DNA repair and recombination proteins [BR:
pscj03400
]
J4856_07005
Enzymes [BR:
pscj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J4856_07005
Transcription machinery [BR:
pscj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J4856_07005
DNA repair and recombination proteins [BR:
pscj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J4856_07005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
QUB45887
LinkDB
All DBs
Position
2:394047..395045
Genome browser
AA seq
332 aa
AA seq
DB search
MAILAFQKPDKVVMLEANDHFGKFEFRPLEPGFGVTIGNALRRILLSSLEGFAINTIRIA
GVEHEFSSVPGVKEDVTNIILNLKQVRFKQVVEEFENEKVSITVENSTEFKAGDIGKYLT
GFEVLNPDLVICHLDSKASMQIDLTINKGRGYVPAEENREFCTDVNVLPIDSIYTPIRNV
KYAVEPYRVEQKTDYDKLIIEVTTDGSIHPKDALKEAAKILIYHFMLFSDEKITLENPDQ
EGNQEFDEEVLHMRQLLKTKLTDASLNLSVRALNCLKAADVETLGDLVQYNKTDLLKFRN
FGKKSLSELDDLLESLNLSFGTDITKYKLDKE
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcgatattagcatttcaaaaacctgataaagtagtgatgctggaggccaatgaccat
ttcggcaagttcgaattccgtcctcttgagcctggctttggtgttaccattggtaacgct
cttcgccgcatcctcctttcatcactggaaggctttgcaatcaacaccatccgtatagct
ggtgttgagcatgagttctcttcagtccctggtgtaaaggaagatgttaccaacatcatc
ttgaatctcaaacaagttcgattcaagcaagtagtagaagaattcgagaatgagaaagtt
agtatcaccgtagagaattcaaccgaattcaaagcaggtgatatcggtaagtatctgact
ggatttgaagtgttaaaccctgatttggtgatttgtcatttagactccaaggcttctatg
cagattgatttgaccatcaataagggacgtggttacgttcctgctgaggaaaatcgtgaa
ttctgcactgatgtaaacgtactcccaatcgattccatctacaccccaattcgtaacgtt
aagtatgcagttgaaccatatcgtgttgaacaaaagaccgactatgacaaactcatcatt
gaagttacgactgatggttccattcacccaaaggatgcattgaaagaggctgcaaagatt
cttatttatcacttcatgttgttctctgatgagaagattactcttgagaatccagatcag
gagggcaaccaggagtttgatgaggaggttctgcacatgcgccagctcttgaagaccaag
ttgaccgacgcaagtctcaacttgagtgttcgtgcactcaactgcttgaaggcagctgat
gtagagacattaggcgacctcgtacagtacaacaagactgatctcttgaagttccgtaac
tttggtaagaaatcgctttctgagcttgatgatttgctcgagagtctgaatctgtcgttt
ggaaccgacattacaaagtataaattggataaagaatag
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