Prevotella scopos: J4856_12640
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Entry
J4856_12640 CDS
T08373
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pscj
Prevotella scopos
Pathway
pscj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4856_12640 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscj03019
]
J4856_12640 (rnr)
03016 Transfer RNA biogenesis [BR:
pscj03016
]
J4856_12640 (rnr)
Enzymes [BR:
pscj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J4856_12640 (rnr)
Messenger RNA biogenesis [BR:
pscj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J4856_12640 (rnr)
Transfer RNA biogenesis [BR:
pscj03016
]
Prokaryotic type
tRNA degradation factors
J4856_12640 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_Dis3
OB_RNB
RNase_II_C_S1
OB_RNR_1st
TEBP_OB2-like
Motif
Other DBs
NCBI-ProteinID:
QUB45548
LinkDB
All DBs
Position
2:complement(1756987..1759284)
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AA seq
765 aa
AA seq
DB search
MRKEKKASKRLTKKQLAEKLISFFQTQPDETFSFKQIFHALKLTTHPAKMLAIDVMEELA
WDDFLSKVGESAYMLNTKGQVQEGTFIRKANGKNTFLPEDGGTPVFVSERNSMAALNGDQ
VRVQFMARRQNHIKEAMVIAILQRKKDTFVGRLRVEKDIAFLVTQENLYIHDILIPKKKL
KGGKTDDRALVKITKWPDADHKNLVGEVVDVLGEAGDNDVEMNTILAQYGLPYKYPKRVE
EAAEKISAEITAQDYAEREDFRDVWTCTIDPKDAKDFDDALSIRKLENGLWEVGVHIADV
SHYVKEGDIIDREAQQRATSIYLVDRTIPMLPERLCNFICSLRPDEEKLAFSCIFNLDEE
ANVKAYRIVHTVIKSNRRYAYEEAQQILEDNGVVDGTGEPAPDPGKAGYKGENAEQIITL
DRLAKQIRARRMKAGSVKFDSEELHFDIDEKGKPIRCYFKRSKDANKLIEEFMLLANKTV
AESVGIVKKGKKAKTLPYRVHDNPDPQKFENLREFSAKFGYKLKSASTKGATARALNKLM
DEVQGKREEKVIQTIALRSMMKAKYTTHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLIT
RYQNGGRSANKEHYEELCEHCSDMELVAQSAERDSIKYKMVEFMGEHIGECYDAHISGIQ
SFGIYAEIDENHCEGMIPMRDLDDDYYDFDEKNYCLVGRRRHHVYQLGDPIRIQVAKADL
ERRQLDFVLDDGRPLKAKQTAAEYAVNRKNDRKSSKRSSKSRRRK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaagaaaagaaagcaagtaagcgattgacaaagaaacagcttgcagagaaactc
ataagtttctttcagacacagcccgacgagacatttagctttaaacagatatttcatgca
ctcaagcttaccacccatccagccaagatgttggctatcgatgtaatggaggaattggca
tgggacgacttcctgtcaaaggttggtgagagtgcttatatgttgaataccaagggacag
gtgcaagagggtacctttatccgtaaggcaaatggtaagaataccttcctgcctgaggat
ggtggtacaccagtctttgtctctgagcgtaattctatggcggctttgaatggcgaccaa
gtgagggttcagtttatggcacgccgccagaaccatatcaaagaggcaatggtcatcgcg
attctgcaacggaagaaagacaccttcgtgggaaggttgcgtgtcgagaaggacattgcc
ttccttgtaacacaggagaatctctatattcacgatatccttatccctaagaagaaactt
aagggaggaaagacagatgaccgtgctttggtgaagataaccaagtggcctgatgccgac
cataagaaccttgtgggcgaagtggtggacgtcttgggtgaagctggtgacaatgatgta
gagatgaataccatccttgcacagtatggcttgccttataagtatccgaaacgtgtcgag
gaggctgctgagaaaattagtgcagagattacagcacaggactatgcggaacgtgaagac
ttccgtgacgtgtggacttgtacgatagacccaaaggacgccaaggactttgatgatgcg
ctctctatccgaaaactcgagaatggattatgggaagtgggcgtacatattgctgatgta
tcgcattatgttaaggaaggcgatatcatcgatcgtgaagcacagcagcgtgcaacatcc
atttacctcgttgaccgcacgattccgatgcttcctgaacgtctgtgcaatttcatctgt
tcgctccgcccagatgaggagaagcttgcttttagttgtatcttcaaccttgacgaggaa
gcaaacgtaaaggcttaccgcattgtgcacacggttatcaagtcgaatcgtcgttatgcc
tacgaagaggcacagcagatattggaagacaatggcgttgttgatggtacaggtgagcct
gcaccagatccaggaaaagcaggatataagggcgaaaatgccgaacaaatcatcacactc
gatcgtcttgcaaaacagattcgtgcgcgtcgtatgaaggcaggaagcgtgaagtttgat
tctgaagagctccacttcgacattgatgagaagggtaagccaatccgttgttactttaag
cgttcaaaggatgccaataagttgattgaagagtttatgctcttggctaataagacagta
gcagaaagcgtcggcatagtgaagaagggcaagaaagccaagacccttccttatcgtgtt
catgataatcctgacccacagaagttcgagaacttgcgtgagttcagcgctaagtttggt
tataaactcaagtctgccagcaccaagggtgccactgctcgcgcactgaacaagctgatg
gacgaggtgcagggtaagcgtgaggagaaggtgatacagacgattgcactccgttcgatg
atgaaggcaaaatataccacgcacaacatcggacacttcggtctggctttcgattactat
acccacttcacttcgcctattcgtcgttatcctgacacgatggttcaccgcttgataaca
cgctaccagaatggtggtcgctcggctaacaaggaacattacgaggaactttgtgagcac
tgttcagatatggaactcgttgcacagagtgctgaacgcgactctatcaagtataagatg
gttgagtttatgggtgagcatatcggtgaatgttatgatgcacacatatctggtattcag
agctttggtatctatgcggagatagatgagaaccattgtgaaggtatgattcctatgcgc
gacctcgatgatgactactatgacttcgatgagaagaactattgccttgttggtcgtcgt
cgtcaccatgtctatcagcttggtgatcctatccgcatacaggtggctaaggccgatttg
gagcgtaggcagctcgatttcgtacttgatgatggtcgtccattgaaggcaaaacaaacc
gctgcagagtatgctgtaaacagaaagaacgaccgaaagagcagcaagcgtagtagcaag
agccgcagaagaaagtaa
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