Mollisia scopiformis: LY89DRAFT_444918
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Entry
LY89DRAFT_444918 CDS
T04865
Name
(RefSeq) Not1-domain-containing protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
psco
Mollisia scopiformis
Pathway
psco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LY89DRAFT_444918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psco03019
]
LY89DRAFT_444918
Messenger RNA biogenesis [BR:
psco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LY89DRAFT_444918
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LY89DRAFT_444918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
28817302
NCBI-ProteinID:
XP_018074852
JGI:
444918
UniProt:
A0A194XL46
LinkDB
All DBs
Position
Unknown
AA seq
2169 aa
AA seq
DB search
MVPSKGGTFTPSPAQQRIETGISHSPHGSHHGPFSAGASPSTSSPTGSNVTKIVVAQVYL
LLSTIKEDKDRTKWEQQAEQIRKLVDEHGMDIFPKYFTRLVVGNAPQIFPGSNRGPIGNG
GNYEILVREVRKIRQDVEQARRIAESIETANEDLFRDFDLSTFMEHFKLDALEKTVLALA
FKIGPRSDLKTKADAILSTNYTPFLQILAQPLEDDVLSDEFVATIVDRFIQYHPPNFDQQ
AKKDLETAISYRYVGLDRAPPAIVLSALYLRSLLDGSNPFASYIQQVGNGFTADEETCKT
HLQNLPGIQITEKFASSALLYTAISRTPVFSPSVLANTLRMSAPNLRWSSIIDYFDIPDL
RISREQLLAIYEALLPLAVDGALDVQQLWGGQWTNPETQLSFINAFTSLTSDLLDASTIP
NLQPAFTVAEFSHAEPEIQERAAQAARHPLVSVVALSAMFNVALDSPTASDSPEAKRLFQ
DVVVPNLDIFLVAAFGVPKPWPDLASDTITNLFERFLYKFDPNYNFVLEGLWIKDQPWVF
GRLTDTHAKSPSDLTIIMDHAVRHNWIDQLVSQPTGFSMDLASVACGRGLVDLEDWAQKQ
AAIRADFVESLLTFLSIKAQHELDLQRQGELRSVALTVKAVWQLLHIVEDLLPKPKTPSH
DLIVVQRTCITAYPRLINYDQGFDDIIDANGANGNSLPKESVAQMEEHYKRMYSDEVQVR
TVVEALNQYKHSRGPAEQDVFACMIHGLFDEYALYHTYPLEALATTAVLFGGIISHRLID
DLPLQIGLGMILEAVRDYTPTQSMYKFGLQALMQLFPRLREWPGFCMQLLQIPGLQNTEA
WAKAKEAAQYQQELDRNAPPGINGGLGAITNGDLDDMPIPALPAFASLHVEDPQYEYEDP
DEDMQDKIQFVLNNITAENLDSKFLELKDVVTEQNLQWFAGHLVQERAKMQPNFHELYLN
LVRLFSKKSLWAELLRETYLCAFRTLNSEATLNSTHERQFLKNLATWLGALTLARDKPIK
HKNIAFKQLLAEGLDSQRLIVVIPFVCKLLVQGQYSTIFKPPNPWIMDIIKALMELYHKA
DLKLNMKFEIEVLCADLGLDHKTIEPSDEIMNRIPDIDPGEVMAPEGLDRFDNLSLNGMA
GGVGGGRFSPQEITSSIPDLGPLLNYPPTNDMVNQGRLQEIVRTAITRAVHEIISPVVER
SVTIAAISTAQMIHKDFATESSETRLRSAAINMVKKTAGALALVTSKEPLRASMTNYIRG
MSGELAQGLPEGTIIMCVNSNLDLACSQVEKKAEERAVPEIEDMIEPELEARRLHRLNRP
EEPYVDPNLNRWSWTIPPPYKLQPSMAGLNQEQMAIYDEFARQPRIPASLGSTTHVPSTS
DATRSMANDILQDQYPAVPNLPTPAEPPAMPHIGTQQPAYAQHNTIMANGRMPSLQVGPA
SVIERLQRTLAELERAVQDSPEQHFRSLRQPHPVLDAFDTVMTLVIRSCQTDALDVPIVP
IVDFISKSLFGGSEHDLLVESLVLVLRNICRLSIRASQLVHNTVENQAGDALLHVPLAVT
LVENEMVDWQRIDQETTKAIKQHKEEAIQFLSALLDAVLLNDRPVALYADFASSLEAAWK
WIEEDPSLEIGQQLKEKLISSGLPQAQNAGSNDERITFVREQMGYVFEEWVRLCNNPNAS
DKASLEFISQMYNRQVINNRDDLCLFLRLSIESSIDRFEQHIQHNGSINDAYIPIDSLAK
LIAMLVKGREQEGEVKADKAAYLKSISSLVVLILNHHHVTRGELFNQKVFFRLLSTMLCE
FSMSADHFSDSENQDIMLVFAHVFLQTRPAYFPGFLFGWLSLVSHRNFLPVLLRLPDQLG
WGPCAELVEGLTSFTGNLLKPLQIQGHTKEVYRGVLKFLLMLQHDFPDFLAANHSQLGNN
IPNHCVQLHNLILTANPASYKMPDPLQPGLKIDRVEEIRVSPANMNDVEIPLRQTGLFDV
INQAFETGASEHAVAQIAHAIQRRKTRQSGLGFVPISVDLNLMEALVVYIGVQSIARAEQ
KGAPTFVPGSPDAVLLSMLVHELNPEARYFLISSIINQLRFPSTHTHYFSQALLGFFGSD
VNDPEELDIRQQVTRILLERLLGQWPHPWGLIVTVQELVKNDQLMFFELPFIKSSPDIQE
RFMALASRG
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atggtaccttcaaaaggagggacttttacaccttcgccggctcagcagagaatagagaca
ggtatcagccattcgccccacggctctcaccacggccccttcagtgctggcgcgagtcca
agcactagtagcccaactggatccaacgtcaccaaaattgtcgttgcccaggtttacctc
ctcctcagcaccatcaaggaggataaagatcgcacaaagtgggaacaacaagctgagcag
atcagaaagctggtcgatgagcacggcatggacatatttccgaaatacttcacccgtctc
gtggttggcaatgctcctcagatcttcccgggctccaaccgtggtccaataggcaatgga
gggaactacgagatcctcgttcgtgaggtacgcaagattagacaagacgtagaacaagct
aggaggattgcggagtcgatagagactgccaatgaggacctctttcgagatttcgacctc
tcgacgttcatggaacacttcaagctggacgcgctcgagaagacagttctggccttagcg
ttcaagattggccctagatcagacttgaaaaccaaagctgatgccatcctctctacgaat
tacacgccatttctccaaatcctagcccaacccttagaagacgatgttctctccgatgag
ttcgtagcaacaatcgttgaccgatttatacaataccaccccccgaactttgaccaacaa
gctaagaaagacctcgagacggctatttcgtatcgttatgtggggttagatcgtgcacct
ccagcgatcgtgctttcggcactttatctaagaagcctactcgatggtagcaatcctttc
gcttcatacatacaacaggttggaaatggatttacagctgacgaagagacttgcaaaact
cacctacaaaatctgccaggcattcagataacagagaaattcgcctcttctgccttactg
tacaccgcgatcagtcgaacccctgtattctctccatcggtcttggcaaacacattacgc
atgtctgctcctaatttgcgttggtcatccataatcgactatttcgatataccagatctc
cgaatatccagggaacaacttctggcaatatatgaagcactactaccattggctgtggac
ggagccttggacgttcaacaattatggggtgggcaatggacaaatccggagacacagttg
tcgttcattaatgcgttcacctctctgacctcggacctgctagatgcaagcaccattccc
aaccttcaaccagcctttacggttgcagaattttcgcatgcagagcccgagattcaagaa
agagcagctcaagcagccaggcatccgttagtctcagtggtggctttgtctgcaatgttc
aacgtagcgttagactcacctactgcatcggattccccagaggcaaagagactgttccaa
gatgttgttgttcctaatctagacatattcctggtagctgcgtttggcgtacccaagccg
tggccagacctcgcatctgatacgattacaaatctgttcgagcggttcctgtacaaattc
gatcctaactataacttcgttctggaaggtctatggatcaaggatcagccctgggtgttc
ggtcggctaactgacacgcatgccaaatcacccagtgatctgacaatcataatggatcac
gcagtccgacacaattggattgatcaattggtatctcagcctactggattctcgatggac
ttggcttctgtggcatgcgggcgtggcttagtggacctggaggactgggcacaaaaacaa
gcggcaatacgagcggattttgtcgagtcactcctgaccttcctcagcatcaaagcccag
cacgaactcgaccttcaacgacagggagaactgcgtagtgtcgcgctgactgtaaaggca
gtgtggcaactcttgcacattgtggaggaccttttacccaaacctaagacaccttcccat
gatttgatcgtcgtccaaagaacatgcatcacggcataccctcgcttgatcaactacgac
caaggttttgacgatatcattgacgcaaatggggcgaacggtaactcgcttcccaaggaa
tctgtggcacagatggaagagcactataaacgcatgtacagcgatgaggtccaagttcgt
accgttgtcgaagctctcaaccagtacaaacattcacgtggaccagccgagcaggatgtt
tttgcttgtatgattcatggactattcgacgagtatgccctttatcacacctatccactt
gaggctctggcaaccactgctgttcttttcggtggtatcatctctcacagactgatcgat
gatttacccctccagattggattgggtatgatactcgaagctgttcgtgactatacccca
acgcagtcaatgtacaaattcgggttgcaagcacttatgcaactatttcctcggttacgt
gaatggcctggtttctgcatgcagctcctccagatccctggcctacaaaataccgaagca
tgggccaaagccaaagaagctgcccaatatcagcaagagctcgatcgaaatgcacctcct
ggtatcaatggcggtcttggagctatcaccaatggcgacttagacgacatgcccattcca
gctctacccgcatttgcatctcttcacgtggaagatccgcaatatgagtacgaggacccc
gatgaggacatgcaagacaagattcagttcgtactcaacaacatcactgcagaaaacctt
gactctaagttccttgaactcaaagacgtcgtcaccgaacaaaatctgcaatggtttgct
gggcatttggtgcaggagcgggccaagatgcagccaaacttccatgagctctacttgaat
cttgtcaggcttttcagcaaaaagtctttatgggcagagctgttgcgtgagacatatctc
tgtgcatttcgaacacttaattcggaggccaccttaaacagcacccatgaacgccaattt
ctgaagaatcttgcaacatggctcggagccctcacactggcccgcgataagccgatcaag
cacaagaacattgcattcaagcagctcttggccgaaggtctcgattcccaacggctcatt
gttgtaattccatttgtgtgtaagctgttggtgcaaggccaatactctactattttcaag
ccacccaacccttggatcatggatattataaaggcgctcatggaactgtaccacaaggcc
gatctgaagcttaacatgaagtttgagatcgaagttctttgtgcagacttaggtttggac
cacaaaaccattgagccatccgacgagattatgaaccgcattccagacatcgatcctggc
gaggtcatggctccagaaggcttggacagatttgacaacctatctctgaatggaatggct
ggtggagttggtggaggccgattttcacctcaggaaatcacctcctctattccagatcta
ggacctctgctgaattatcctcctacgaatgacatggtcaaccaaggtcgcttgcaagaa
atcgtgagaacagccatcaccagagcagtccacgagatcatatcccctgtggttgagcgc
tctgttaccattgcggctatctctacggcgcagatgatacacaaagacttcgccactgaa
tcatccgaaaccagactccgttctgccgcgatcaacatggtcaagaagactgctggtgct
ttggctttggttacatcgaaagagccactacgtgcaagcatgaccaactacattcgtggg
atgtccggcgaattagcacaaggtctgccagaaggcaccatcatcatgtgtgttaactcg
aacttagacttggcttgcagtcaagtggagaagaaggcagaagagcgagctgtgcccgag
attgaagatatgattgagccagaactcgaagctcgccgccttcatcgactgaacagaccg
gaagagccgtatgttgatccaaatttgaatcggtggtcgtggactatccctcccccttac
aagttgcagccttctatggccgggttgaatcaggagcagatggccatctacgatgagttc
gcacggcagccacgaatcccagcatcgctaggtagcaccacccacgtaccttccacttcc
gatgcaaccaggtctatggcaaacgacatccttcaagatcagtacccagcagtaccaaat
cttcctacgccagcagaacctcccgccatgccgcatattggtacacaacagccagcgtac
gcccagcacaacacaatcatggctaatggccgtatgccatcgttgcaagtgggccctgct
tcagtcattgaacgcttgcaaaggacattggcggaactcgaacgcgctgttcaagattcg
cctgaacagcactttcgatcacttcgccaaccccatccagttctcgacgcttttgatacc
gtcatgaccttggtcattcgaagctgtcaaactgacgccctcgatgtgcccattgtgccc
atcgtcgatttcatctccaaatcgctttttgggggcagtgagcatgatcttcttgtggaa
tctttggtcctcgtgttacggaacatttgcagactttctatccgtgcttctcagcttgtg
cacaacaccgttgagaaccaagcaggggatgccctcttgcacgttccattggcagtcact
cttgttgaaaatgagatggtcgactggcagcgcatcgatcaagaaacgaccaaagccatc
aagcaacacaaggaagaagcaatccaattcttatctgcactgttggatgcggtccttctt
aatgatcggcctgtagctttgtatgctgacttcgccagcagcttagaagccgcttggaag
tggattgaggaagatccgtccctcgagatcggccagcagctgaaggagaaattgataagc
tcgggtcttccccaggcacagaacgcgggcagtaatgatgaacgtataacatttgtccgt
gaacagatgggatacgtcttcgaggaatgggtgagactttgcaacaatcctaacgcctcg
gataaagcctccctcgagttcatctctcagatgtacaacaggcaggtaatcaacaatcgg
gacgatctttgcctcttcttgcgcctgtcaatcgaatcctctatcgatcgtttcgagcaa
catattcaacacaacggaagcatcaacgacgcctacattcctatagactctttggctaag
cttatcgccatgctagtcaaaggtcgtgagcaagaaggagaggtcaaagctgacaaagcc
gcatatctcaagtcgatttcatccctcgttgtcctcattctgaaccaccatcacgttacg
cgtggagagctgttcaaccagaaggtgttcttcagattgctgtccaccatgctttgcgaa
tttagcatgtctgctgaccacttttctgactccgagaaccaagatatcatgcttgtcttt
gctcatgtattcctgcagactcgaccagcatatttcccaggcttcttatttggatggctc
agtttggtttcacatcgaaatttcttacctgtgttactaagacttccggatcagcttggc
tggggcccatgcgctgaacttgtggaagggctgacgtcctttacgggcaatcttctgaag
ccattgcagattcaaggtcatacgaaagaagtctaccgaggcgtgctcaaatttctcctt
atgttgcaacacgacttcccggacttcttagctgctaatcattctcagctgggtaacaac
attccaaatcattgtgtccaacttcataatttgattttgaccgcaaatcctgcatcatac
aagatgcccgatccattacaaccgggcttgaaaattgaccgcgtggaggaaatccgtgtg
tctcccgccaacatgaatgatgtcgagattccactgcgccagacaggtctattcgatgtc
atcaaccaagcattcgagacgggagcttctgagcatgcagttgctcagattgcgcatgcg
attcaacgaagaaaaactcgacaatctggtctaggcttcgtacctatttcagttgatctg
aatctcatggaggctctggtcgtttatattggagtgcagtcaatcgctcgcgctgaacag
aaaggggctccgacatttgttcccggatctcctgatgccgtcctcctatccatgcttgtt
cacgaacttaatcccgaggcacgctacttcctcatcagtagcatcatcaatcaacttcga
ttcccaagtacgcatacccactacttcagccaagcacttctaggattctttggcagtgac
gtcaatgatccagaagaacttgatattcgccagcaggtcacccgaattctattggaacgc
ttgctgggacagtggccgcatccttggggactgatcgtcacggtccaagaattagtcaag
aatgaccagcttatgttctttgagcttcccttcatcaagtcgtcaccagatatccaagaa
cgctttatggctctggcttctcggggatga
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integrated database retrieval system
