Mollisia scopiformis: LY89DRAFT_573930
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Entry
LY89DRAFT_573930 CDS
T04865
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
psco
Mollisia scopiformis
Pathway
psco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LY89DRAFT_573930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psco03021
]
LY89DRAFT_573930
Enzymes [BR:
psco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LY89DRAFT_573930
Transcription machinery [BR:
psco03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
LY89DRAFT_573930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
28818435
NCBI-ProteinID:
XP_018077456
JGI:
573930
UniProt:
A0A194XSI2
LinkDB
All DBs
Position
Unknown
AA seq
1710 aa
AA seq
DB search
MNISQPVPSAIGSVDFGFLSPAEIKKLSVKRIENPQTFDTLLHPVPGGLYDPALGAWGDH
FCTTCNLNGIGCPGHVGHIDLPAPVYHPTFMDQLLRLLRSKCAYCHHLKMSRKEVNRYMC
KLRLVQHGLLGAAEEIDNIEIIEKKEDAASGEDSDDGEESAMDVIIRRRNAFVKKSIKAA
KATAWEWKREKNEGVAEARRTVVKAFLKAITASKACGNCNGISPTFRKDRYVKIFEKALS
VKDKHKMAQGDFRAINAVEILSSGKKGNGYADFDEGIADIDLDSNEEDDEGEGQTLDVNG
DVVMGEASATTTSKPKVAPLAQRYISPMEVKASLTLLFEKEQEILSLVYNSRSTTKKATK
VSPDMFFLQTLLVPPNKYRPEARTGDGEISEAQQNSLYKAILKGCETMAHIYNDISNPDR
VVDNPGMRKRDIYDLHESWCQLQDYVNSLIDRDRNPIQGAAGKKNEDGIKQKLEKKEGLF
RKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTFPEPVTSHNFKDMQQAVINGP
DKWPGAAAIENENGQVISLRTKTQDERLALANQLLASSNSSASGARNKKVHRHLTNGDVV
LMNRQPTLHKPSIMGHRARVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQTEPARAEA
LQIADTDHQYLSATAGKPLRGLIQDHISVSVWMCNRDTFFDRAAYQQLIYNCLRPENGHI
VGERIETVPPAILKPVARWTGKQVITTILKNITPVDCAPLTLTSKSQTPSNRWGDKSEEG
IVHFKGGEFVTGILDKSQIGPSGGGFVHSIHEVYGPTAAGKVLSILGRLLTKFLHMRAFT
CGMDDLRLTPEGEEMRREKLARAEKLGLEVASKYVTLSDQNPSDTDPELLSRLEDVLRDD
TKQAGLDTMMNKQSGYLSSDITMACLPGGLVKQFPKNQMQNMTVSGAKGSAVNANLISCN
LGQQVLEGRRVPVMVSGKSLPCFRPFETHIRAGGYVVNRFLTGIRPQEYYFHAMAGREGL
IDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMVQFLYGEDGLDSTKQKHLQDF
KFLLENITSELAQLNYGDPRYATIFDEKDVIVKRMKKAVKHAKANDNNGPDPVLADFNPG
KYGYATSEKFFEALTDYLKSNPDGLVKDKEHPRGVGVRKALEPVLMAKYLKSVVEPGEAV
GIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASNHISTPTMTLRLNPE
LTEEDGKRFAKGISILSLAEVLDEATVQERIGKGTAYSQAKIYEIHVKLFPSKEYTETYA
ISISDVLTTLEKKFAPKLQQFTRKALGKKKTEKGLKSAANTAAVPEIGKSVGTIEEAGAS
VEREVNEDDDDDDGDDDATNDKQRANRAEAVSYAANDEDDDRVQAQMQKEAEPEEDDEDM
EDEGIGGSPREPTSDDEEDQVRKSHAHSQVVSAAVEERETRVMKSCNDIVRFRFDEENGE
WCDITVEYDAEVPKVLMLTIVEDALRQSLIQQIPNIGGCIFVPDAEVKDSNGKTINAPVV
HTEGVNLTAMQAYASFINPNTIYTNDIAAMLTNYGVEACRGAIVQELSGVFGGHGISVDN
RHLNLIADHMTRGGGFSPFNRNGMRGSVSPFMKMSFETTVGFLADAVTDGDWDDLSNPSS
RIVIGRMSKVGTGAFDVLTQVPTRKGDEEV
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgaacatctcgcaaccagtaccgtctgccattggcagcgtagactttgggtttctcagt
ccagcagaaatcaaaaagctttcagtaaagagaatagaaaaccctcagacgtttgatact
ctacttcatcccgttccaggaggactttatgacccagctctgggcgcatggggcgatcac
ttctgtacaacatgcaatctcaacgggataggatgtccaggtcatgtcggccatatcgac
cttccagctcccgtttaccaccccacgtttatggaccagcttctgcgattattacgatca
aaatgcgcatactgtcaccacttgaagatgtcgaggaaagaggtcaatcgatacatgtgc
aaacttagattagtacagcatggtcttcttggagcagccgaagagattgacaacatcgag
atcattgagaagaaggaagacgccgcatctggtgaagatagtgatgacggcgaagaatct
gccatggatgttattataaggcggcggaacgcttttgtaaagaagtcgatcaaggcggcg
aaagctacagcatgggaatggaaacgagaaaagaatgaaggagtcgcagaagcacggcgg
acagtagtcaaggctttcttaaaggctatcacagctagcaaagcctgtggaaactgcaat
gggatatcgcctacttttcgcaaagatcgctacgtcaaaatcttcgaaaaggctctcagt
gtcaaggacaagcataagatggctcaaggagatttccgagcaatcaatgcggtcgaaatc
ctgagctcgggaaagaagggaaatggctatgcagacttcgacgaaggaattgcggacata
gacctggattcaaacgaggaggacgacgaaggagaggggcaaactctggatgtgaacgga
gacgttgtcatgggtgaagcctctgcgaccaccacttcaaaaccaaaagtggcacctttg
gcacagcgatatatcagtcccatggaagttaaggccagtctgacgctgctttttgagaag
gagcaggaaattctttctctggtttacaattctcgttcgacaacaaagaaggcgacaaaa
gtgagccccgacatgttcttcttacagactctcctggtcccccctaacaagtaccgtcct
gaggcccggactggagatggtgagatatctgaagcacagcagaactctctgtacaaagcg
atattgaagggctgtgaaactatggcacatatatacaacgatatatcgaatccagacaga
gttgtcgacaaccctggtatgcgaaagagagacatttacgatcttcacgaatcatggtgc
caacttcaggattatgtcaactcgctcatcgatcgtgaccgaaatccgatccagggagca
gcagggaagaagaacgaggatggtatcaagcaaaaacttgagaaaaaagagggtctgttt
cgaaaaaacatgatgggaaagcgagtcaattttgctgctcgttccgtcatctctccagac
ccgaatatcgagacgaacgaaatcggcgtacctcctgtctttgcgaaaaagttgacattc
ccagagccagtgaccagccataacttcaaggatatgcaacaagctgtgattaatggtcca
gacaagtggccaggtgctgcagctatcgagaatgagaatggacaggttatcagtttgagg
acaaagacccaggatgaacgcctagcattggcaaaccaattgcttgcctcctctaatagc
agtgccagtggtgccagaaacaagaaggtccatcgacatttgacaaatggagatgtggtc
ctaatgaatcgtcaaccaacattgcacaagccttccattatgggtcaccgagcaagagtt
ctaccaggagagaagacaattcgcatgcactacgcaaattgtaatacctataacgctgat
ttcgacggagacgaaatgaacatgcatttccctcaaactgaaccggccagagcagaagct
cttcagattgcagacaccgaccaccaatatctcagcgctacagccggaaagcctttgcgt
ggtctaattcaagatcatatctctgtgtccgtctggatgtgtaatcgagatacctttttc
gatcgcgcggcctaccagcaactcatctacaattgtctgcgtcctgagaatggtcacatt
gttggagagcgaatagaaaccgtcccaccagctatcctgaagcctgttgcaaggtggacc
ggaaaacaggtcattacaacaattctcaagaatatcactccagtcgattgtgcgcctctt
acactcaccagcaagtcacaaaccccatccaatagatggggagacaagtcagaggaaggc
atagttcatttcaagggcggagagttcgtcactggcatcctcgacaagtcgcagattggg
ccgtcaggaggtggtttcgttcactccatacacgaagtttatggccccacagctgcagga
aaagttctaagtatactgggccgtcttctgacaaagttcttacatatgagagcattcact
tgcgggatggacgatctgcgtctgacaccggaaggagaagagatgcgccgagagaaactt
gcacgcgcagagaaacttggtcttgaagtcgcatctaaatacgttactttgagcgatcaa
aaccctagtgacacggaccccgagcttttaagcagattggaagatgtcctgagagacgat
accaagcaagctggactagacactatgatgaacaaacaatcaggttacttgtcgtcagat
attaccatggcgtgtcttcctggtggcctagtaaagcagtttccgaagaaccagatgcag
aacatgactgtatctggagccaaaggtagcgctgtcaacgccaatcttatctcttgtaac
ctaggtcaacaagttctggaaggtcgccgggtgccagtcatggttagcggcaagtccctt
ccatgcttcaggccattcgagacacatatccgtgctggagggtatgttgtcaatcgtttc
ttgacaggtatcagacctcaagagtactacttccacgcaatggccggtagagaaggtcta
atcgataccgctgtcaaaacctctcgttctggatatcttcaacgatgtcttattaaagga
atggagggtctcaaagttgaatacgatacatctgtccgggattctgacggatctatggta
caatttctctacggtgaggatggcctagactcgacgaaacagaagcatttacaggacttt
aagttcttattggagaacatcacatcagagctggcccagttgaactatggcgatccgaga
tatgccaccatcttcgatgagaaagacgttattgtcaaacgaatgaagaaagcagtgaag
catgccaaggccaatgacaacaatggccctgaccctgttcttgcagacttcaaccctggc
aaatatggatatgcgacctcagagaagtttttcgaggctttgacggactacttgaaaagt
aatcctgatggtcttgtcaaggacaaggagcatcccaggggcgtgggtgttcgcaaggct
cttgaacctgttttgatggcaaagtatctgaagtctgtcgtcgagcccggtgaggctgtg
ggtatcgttgcgggtcaatcagttggcgaaccatcgacacagatgacgctgaacactttc
catttggcaggacattctgcgaagaacgtcactcttggtattcctcgccttagagaaatt
gtcatgacggcaagtaatcatatttccacaccaaccatgacgttacgactcaacccagag
ctcaccgaagaggatgggaaacgttttgctaagggcatcagtattctctccctggctgaa
gtcctggacgaagcgacggtacaagaacgcattggcaaaggcacagcctattctcaagct
aagatttacgagatccatgtcaagctctttccttcaaaggaatacaccgagacctatgcg
atcagcatttcagatgtgctcacaacattggagaagaagttcgctccgaagctccaacaa
ttcacacgcaaagcactcggaaagaagaagactgagaaaggcttgaagtccgctgcgaat
actgctgctgtgcctgagattggtaagtctgttggcactattgaagaggccggagcttca
gtagaacgagaagtcaatgaggatgacgacgatgatgatggagatgatgatgcgacgaac
gacaagcagagggcaaaccgtgccgaagctgtcagctatgccgcaaacgacgaggacgat
gatagagttcaggctcagatgcaaaaggaggcagagcctgaagaggacgatgaggatatg
gaagatgaaggcatcggtggttcgcctcgagaaccaaccagtgatgacgaagaagaccaa
gtccgcaagagccacgcgcacagccaagtcgtttccgctgctgtagaagaacgagaaact
cgggtcatgaagtcgtgcaatgacattgttcgcttccgtttcgatgaagaaaatggggag
tggtgcgacatcacagtggagtacgatgccgaagtacccaaggtcctcatgctcaccatt
gtcgaggacgctttacgacagagtttgatccagcaaatcccaaatattggaggctgcatc
ttcgtacctgacgcagaggttaaagattcgaatggaaagacgattaacgctcctgtcgtc
cacacagaaggagtgaatctcacagcaatgcaggcttatgcttcgttcatcaacccgaac
accatctatacgaacgacattgcagccatgctcaccaattacggcgttgaagcatgtcgc
ggtgccatcgtacaagagttgtcaggtgtcttcggtggtcacggtatcagtgtcgataat
cgacatttgaacctgatcgcagaccacatgactagaggtggaggcttcagcccattcaac
agaaatggaatgaggggaagtgtgagtccgttcatgaagatgagtttcgagacaacggtg
ggcttcttggcggatgctgtcaccgatggcgattgggacgatttgtctaatccgagttcg
agaatcgtcattggcaggatgagcaaggttgggacgggcgctttcgatgtgctgacgcaa
gttcctaccaggaagggtgatgaagaggtgtaa
DBGET
integrated database retrieval system
