Mollisia scopiformis: LY89DRAFT_620011
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Entry
LY89DRAFT_620011 CDS
T04865
Name
(RefSeq) TPR-like protein
KO
K12600
superkiller protein 3
Organism
psco
Mollisia scopiformis
Pathway
psco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LY89DRAFT_620011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psco03019
]
LY89DRAFT_620011
Messenger RNA biogenesis [BR:
psco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
LY89DRAFT_620011
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_16
TPR_22
TPR_19
TPR_CcmH_CycH
TPR_2
TPR_1
TPR_17
TPR_14
TPR_8
TPR_12
TPR_11
ARM_TT21_5th
TPR_9
TPR_7
ARM_TT21_C
TPR_Slam
T7SS_EccA1_N
TPR_COPA_B
E_motif
Motif
Other DBs
NCBI-GeneID:
28820625
NCBI-ProteinID:
XP_018069166
JGI:
620011
UniProt:
A0A194X3R5
LinkDB
All DBs
Position
Unknown
AA seq
1421 aa
AA seq
DB search
MSGPKAALKGIGAAIKAQKYDDAVQEAQKLLVSDPKSYQASIFLGFALAKQNKYPEAEKA
YEGATKIKDRDPQAWQGLIQLHEKQGSDKVELYQVAALKLAEIYQSADDKYKCQDVVDKF
LGFAKNQGTRLQYKKSQEIILPTSPIYNYLEGRVPHPAHTYQIMAQITEFEEKERINKTI
GERRTRIGAQIGQVTIDVKREVFRDSDLEDLYGKIIDWSNDDEVRRQYEEKLLQRCMEAL
TVLVPSTDKNEKRAKVMKLANDMVIIKHPYKVAWDIAIEWQDPVNIQDLDVNILRDYAAF
FPTSGLGQVLRGFLSSEISPFTAPPPPVQPAQASTSDESDDEDDDAGGVSLDAPTNSEDR
LLLMTEGMSDSAKSILAHRLMGEYYQFLEEYESVVELMRNARHLIVAESEKTGLTFDRSS
DAIISLLGTALVYYQSPRNHPEAKTLFDGLLRRDPTSTPAMIGIGLIYEEEEDYPAAIGF
LERALKRDPSNIRVKTEAAWVKALDGDYISGKAELENCLSNLDGKNARVRDLLAQTQYRL
GICLWNMDTSKAARKDRNGAYAYFLAALKSNLNYAPAYTSLGIFYADYLKDRKRSRKCFQ
KAFELSPSEIEAAERLAKIFAEQGEWELVEVVAQRVVDSGKVRPALGSKKKGVSWPFAAL
GVAELNKQDYAKSIVSFQSALRITPNDYHSWVGLGESYHNSGRYIAATKAFQHAEKFEHE
VEQQKAGETWFAKHMLANVKRELGDYDEAIDGYKYVLKERPTEFGVSIALIQALVESAWD
GIDKGLFGHAAQRATEAITESASLAESRADAFNLWRAVGDACSVFSWVQSRLSDFPHSLV
KQLLQVGDKKDAYDMFTDIDGVGDVAFADGLYSADEENGVNLTRCLHAAIMAHKRAIYAS
AHDIHAQAVAYYNLGWAEHRAHVCISAEVKKKSTRYLQAAVRSFKRAIELEAGNSEFWNA
LGVVTSDLNPRVAQHSFVRSLFLNERSAQTWTNLGTLYLVQNDFMLANEAFTRAQSSDPD
FAHAWVGQGLLALLMTGDTKEANLLFTHAMEISEASSLLTKREYAQSVFDQILVSKSRSK
VTDLVQPLFALKQLQSMDPNGMSYEHLSTLFLERIDNVPLALETLSRICSIVEADYEITE
SPSSLSRFALAKADLARSQLSAKLYGEAVENGDTALQLSAEDAGNELSAEARQKCRLSAH
LTVGLAQYYSNDLEAALQYFLPALEESNGNPDAVCLFAQVLWAKGDGDSRSKAREQLFDS
VENHPEHVQSVLLLGIIALLDNDTESLEAVTTTLQDLRATHTITNLEQGQVGEVLRAIAA
LSEHDAELETLAEIQTDVFLHPHQPHGWGRLADIDGDDYAANMAVKTALKAIPPLGQLDA
TDLSEAFAGTGKIGDAQKAVLIAPWRNEGWETLGGALSGSQ
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaccaaaagctgcgctgaaaggtatcggcgcggccatcaaagcccaaaaatat
gatgatgcagtacaagaagcgcaaaagctattggtgtcagatcccaagagctaccaggca
tcaatattcctaggttttgccctcgccaaacaaaacaaatatccagaagccgagaaagcc
tacgagggcgcgacaaaaatcaaagatcgcgatcctcaagcatggcaaggtctcatacaa
ctgcatgagaagcaaggaagtgataaagtagaactttaccaggtggcggcgcttaagctg
gcagaaatatatcagtctgcagatgacaagtacaagtgccaggatgtcgtggacaagttc
ttaggctttgcaaagaaccaaggcacgcgcctacaatacaagaagtcccaggagattatc
ctaccgacgagcccaatttacaattatctagaaggcagagtaccgcatccagcccacacg
tatcagatcatggcacagattaccgaattcgaggagaaagaacgtatcaacaagaccatt
ggtgagcggaggactagaatcggagctcaaatcgggcaagtcacaattgatgtcaaacga
gaagtgttccgggatagtgatctcgaagatctttacggcaagattatcgattggagcaat
gacgatgaagtccgacgtcaatatgaggaaaagcttctccagagatgtatggaggctttg
actgttctggtaccgagtacagacaagaacgagaagcgtgcgaaagtcatgaaattagcc
aacgacatggtcattattaagcacccctacaaggtagcatgggacattgcaatagagtgg
caagatccggtgaacatccaggatctagatgttaacattctacgcgattatgctgccttc
tttccaaccagtggtcttggccaagttttgcgaggtttccttagtagtgagatttctccc
ttcactgctccaccacctcctgttcaaccggcacaagcgagcacctcagacgaaagcgac
gatgaggatgacgatgctggaggtgtttctttggatgcgccaaccaacagtgaggatcgc
ctactattgatgactgagggcatgtcagattcagcaaaatcaatacttgctcatcgactc
atgggggaatattaccaattcttagaagagtacgaaagcgtagtggagcttatgcgaaac
gcccgacacttaatcgtggctgaatctgaaaagactggcctgacgttcgatcgttcttcc
gatgcaatcatttctcttcttggtactgcacttgtgtactatcagtcacctaggaaccat
cccgaggcgaagacactgttcgacggattgcttcggcgagaccctacctccacacctgcc
atgattggaatcggactgatctacgaagaggaggaagactaccctgccgccataggtttt
ctggaacgtgctttgaaaagagacccaagtaacatacgtgtcaagacggaagctgcatgg
gtcaaggcgctcgacggcgattacattagtgggaaagctgaattggagaattgcctttca
aaccttgacggtaaaaatgccagggtgagggaccttctagcccaaacacaatatcgtctg
ggtatctgcctctggaacatggacacctctaaagccgctcggaaggatagaaatggtgct
tatgcttatttcttagcggctttgaaaagcaatctcaactatgcgcctgcctatacaagt
cttggaatattctatgcagactatttgaaggacaggaagaggtcacgaaagtgctttcag
aaggcgttcgagctatcgccctctgagatcgaagcagccgagagattagctaaaatattc
gcggaacaaggcgagtgggaattggttgaagtcgtcgcacaacgcgtcgtcgattctggc
aaagttaggccagctcttggctccaagaagaaaggcgtcagctggccatttgctgcattg
ggagttgcagaattgaacaagcaagattatgctaaaagtatagtttctttccaatcggct
ctcagaatcacaccgaacgactaccattcttgggtgggccttggagagagctaccacaat
tctgggaggtatatcgccgctaccaaagcattccaacacgctgagaagtttgagcatgag
gtcgagcaacaaaaagccggcgagacatggtttgcaaaacatatgttagcaaatgtaaag
cgagagttaggtgactacgacgaggctatcgatggctataaatatgtcttgaaagagcgc
ccaacagagtttggagtctctatagccttgatacaggccttggttgaaagtgcttgggat
ggtatcgacaaggggcttttcggccacgctgctcaacgtgcgactgaagctatcactgag
agtgcttctctggctgaatctagagcagatgcattcaatctctggagagctgtaggtgat
gcttgctcagtcttttcttgggttcagagtcgcctctcggattttccacattcactcgtt
aaacaattacttcaagtcggagataagaaagatgcttacgacatgttcaccgacattgac
ggagttggtgatgttgcctttgcagacgggctctattccgcagacgaagaaaatggagta
aatctcacacgatgcttacatgcagcaattatggcacataaaagagctatatacgcctcc
gctcacgatattcatgctcaggctgttgcttactataatctgggttgggccgagcaccga
gctcatgtttgcatatctgcagaggtcaagaagaaatcaacacggtatcttcaagccgca
gttcgatctttcaagagagctattgaacttgaagctggaaactcagaattctggaatgcc
cttggtgtcgtcactagtgatctcaatcctcgagttgcccaacattcgtttgtccggagc
ttgtttctcaacgagagaagtgcccagacttggacaaatctaggtaccctttacctcgtg
cagaatgatttcatgctcgccaacgaggcatttacgagagcgcaatcaagtgatcctgac
tttgctcatgcatgggtcgggcaaggactactggccttgctgatgactggggataccaag
gaggccaatcttcttttcactcatgccatggagatatctgaagcgtcgtctctcctaacg
aagcgggagtatgcacaatccgtcttcgatcagattttggtttctaaatcaaggtcaaaa
gtcacagatctggttcaaccactctttgcactgaagcaattgcaaagcatggatccaaac
ggcatgtcatatgagcacctctctactttattcttggaacggattgacaatgtaccactg
gcccttgagactctttccaggatttgcagcattgtcgaggctgattacgaaatcaccgag
tcgccttcctctctgtcccgcttcgctctcgcgaaggccgacctggctcgatcacagctt
tctgccaaattatatggtgaagcagtcgagaatggtgatacagcgctgcagctcagtgct
gaggatgccggtaacgaactctcagcagaagcacgccaaaaatgcaggttatctgctcat
ctgaccgtcgggttagcacagtactactccaatgacttggaagctgcgctgcagtatttc
ttgcctgcactggaagaatcgaacggcaatccagatgcagtctgtctttttgcccaagtc
ctctgggctaaaggcgacggggattcgcgaagcaaagcacgagaacaattgtttgattct
gttgaaaatcaccctgagcatgtccaatctgtactcttactcggcattattgctctgctc
gacaatgatactgaaagcctggaggctgtcacgactacgcttcaagacctacgagctact
catacgatcactaatctggaacaaggacaggttggcgaggtgctaagagccatcgcagca
ttgtctgagcatgatgctgagttggagactttggcggagattcaaactgatgtgttctta
cacccacatcagccgcatggatggggtcgcttggcagatatcgatggagacgattatgca
gctaatatggcggtcaagactgctttgaaggctattccaccacttggtcaattggatgct
acggatttgtcagaggcgtttgcggggacaggaaaaataggtgatgcacaaaaagctgtt
ttgattgcaccatggagaaacgaaggttgggagacattgggtggtgcattgtctgggagt
caatag
DBGET
integrated database retrieval system
