Mollisia scopiformis: LY89DRAFT_624442
Help
Entry
LY89DRAFT_624442 CDS
T04865
Name
(RefSeq) antiviral helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psco
Mollisia scopiformis
Pathway
psco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LY89DRAFT_624442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psco03019
]
LY89DRAFT_624442
03041 Spliceosome [BR:
psco03041
]
LY89DRAFT_624442
03009 Ribosome biogenesis [BR:
psco03009
]
LY89DRAFT_624442
03016 Transfer RNA biogenesis [BR:
psco03016
]
LY89DRAFT_624442
Enzymes [BR:
psco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LY89DRAFT_624442
Messenger RNA biogenesis [BR:
psco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LY89DRAFT_624442
Spliceosome [BR:
psco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LY89DRAFT_624442
Complex C
U4/U6.U5 tri-SnRNP related factors
LY89DRAFT_624442
Ribosome biogenesis [BR:
psco03009
]
Eukaryotic type
Pre-60S particles
Helicases
LY89DRAFT_624442
Transfer RNA biogenesis [BR:
psco03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LY89DRAFT_624442
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
nSTAND3
eIF3_p135
Motif
Other DBs
NCBI-GeneID:
28820772
NCBI-ProteinID:
XP_018066418
JGI:
624442
UniProt:
A0A194WVS0
LinkDB
All DBs
Position
Unknown
AA seq
1072 aa
AA seq
DB search
MDDLFGVFEESSQQSAPAKKPKKSKKEKLDKSKKRNANGEVKKALDDQDGDADMVDADIQ
DEEDNALVEKKDTKRRRREEEAEPVVTDSFQTEQSREVVAAAGLQAKDDGALVLQHNIQH
QVSLPPNYNYVPISQHVPPAVPARKWPFELDPFQKVAIASIERSESVLVSAHTSAGKTVV
AEYAIAQCLKNNQRVIYTSPIKALSNQKYREFTAEFGDVGLMTGDVTINPTATCLVMTTE
ILRSMLYRGSEIMREVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAM
QFAEWITKTHQQPCHIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFREENFQKAMAAI
EEKKGADPADINAKRKGHGKDKKTNKGAPNENNDIYKIVRMIMVKHYNPVIVFSFSKREC
EAYALQMSSMAFNDESEKAMVTKVFESAIESLSDEDKTLPQIQHILPLLRRGIGVHHSGL
LPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVEKFDGTKTRYLTPSEFVQ
MSGRAGRRGLDDRGIVIMMINGKMEPQTAKEIVRGEQDKLNSAFYLGYNMILNLMRVDGI
SPEFMLEHCFYQFQNTSSVSGLEKELQQLQTQRDSIVIPDEATMKEYYELREQIASYTKN
MRDVINHPNYCLQFMQPGRVVHIKYRDVDFGWGAVVKFAPVRPGQGGEEILPQESYVLDI
LLPVSDGSSVGVHSQNGIPPGIRPPAKGEKGRMEVVPVLLSCVEAIGHVRIFLPQDLHPA
DQRTNVRKSLDEVKRRFPDGIAILDPIENMGITDESFKRLLRKIEVLESKLLSNPLHGSP
RLPDLYDQYAEKIDIGRKIKEKKKAVTAALSIMQLDELKSRKRVLRRLGFINDQEVVELK
ARVACEISSTGDGHELLLSELLFNRFFNELSPEVCAAVLSCFIFEEKSQAPEPLKEELSK
HFREIQAQARVIAKVSQESKIELNEKEYVDSFKWELMDVVLAWAQGKSFAEICKMTDVYE
GSLIRLFRRLEELLRQMAQAGKVMGSDELAGKFEESLAKIRRDIVAAQSLYL
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctattcggagtgttcgaggagagctcacagcaaagtgcgcccgccaaaaaa
cctaagaagtcgaagaaggagaagctcgacaagagcaagaagagaaacgcaaatggcgaa
gtcaagaaagccttggacgaccaagatggcgatgcggacatggtagatgcggatatacag
gacgaggaagataatgcgcttgtcgagaaaaaggatacgaaaaggaggcgccgagaagaa
gaagcagaaccagtcgtcacagattccttccagaccgagcagtccagagaagttgtagct
gcggcaggactacaagccaaagacgatggtgcattggttcttcaacataacattcagcat
caagtttccctgcctccaaactacaactacgtcccgatctcacaacatgtaccacctgcg
gttccggctcgcaagtggcccttcgagttggatcccttccagaaagtagctatcgcctcg
attgaacggtcagagagtgtactggtgtcggcgcatacgagtgctggaaagactgtggtt
gcagaatacgctatcgcccaatgcttgaagaacaaccagagggtcatctataccagtccc
atcaaagcattgagcaaccagaaatatcgagaattcacagcagagttcggcgatgtcggt
ttgatgactggcgatgtgacgatcaatcccacagccacctgtcttgttatgacaacagaa
attctacgatctatgctgtaccgtggttcagagatcatgcgagaggttgcttgggtcatc
ttcgacgagattcactacatgcgagataagacaagaggtgtggtctgggaagagacgatc
attctattgccggacaaagtcagatacgtctttctgtcagctactatcccaaatgctatg
caattcgccgagtggatcaccaagacacaccaacagccgtgccatattgtctatacagat
ttcagaccgacgccgcttcagcattatttctttcccgctggagctgacggtattcatctg
attgtcgatgagaagggcaacttccgagaggagaattttcagaaggccatggctgccatt
gaagaaaagaaaggagcagatccagcagatatcaatgctaagcgaaaaggtcacggcaag
gacaaaaagacaaacaagggagctcccaatgagaataacgacatctacaaaattgtccgc
atgatcatggttaagcactacaatcctgtcatcgttttcagtttcagcaaaagagaatgc
gaggcatatgcgttacagatgtcttcgatggctttcaacgacgaatcagagaaggcaatg
gtcaccaaggttttcgaaagtgccatcgagtccctctcagatgaggacaagaccctccca
caaattcaacacatcttgccgctccttcgccgcggaattggagttcatcattctgggctg
ctaccaattttgaaggagacaattgagatcctgttccaagagaacttgatcaaagtactc
tttgctacggaaactttctccattggcttgaatatgccagcaaagactgtagttttcacg
agcgttgagaagttcgatggtaccaaaacccgatacttgactccgtcagaattcgtacaa
atgtctggacgtgctggtcgaagaggtcttgatgatagaggcattgttatcatgatgatc
aacggcaaaatggagcctcaaaccgccaaggagattgttcgaggagagcaagacaagctt
aattccgcgttctaccttgggtataacatgatcctcaacctgatgcgagtggatggcatc
tctcccgagtttatgctagagcattgcttctatcaattccaaaacacctcgagcgtgtcg
ggattggagaaggaacttcaacaacttcagacacaacgagacagcattgtcattcctgat
gaagctactatgaaggagtactatgaactacgagagcagattgcatcttacaccaagaat
atgcgcgatgtcatcaatcatcccaattactgcttgcaattcatgcaacccggacgtgtt
gttcatatcaagtatcgggacgtggattttggctggggagctgtcgtcaagtttgctcct
gttcgccctggtcaaggaggagaagagatcttgccccaagagtcatatgttcttgacatc
ttgctaccggtatcagacggttcatcggtcggagtgcatagccaaaatggtatacctcct
ggaattagaccacctgctaaaggtgaaaaaggaaggatggaagtcgtaccagttctcttg
tcatgcgtagaggcgatcggccatgttcggatattcttgccgcaagatcttcatccggca
gaccaaagaaccaacgtccggaaatccctcgacgaagttaagcgtcgattccctgatggc
attgcgatccttgatcctatcgaaaacatgggcatcacagatgagtctttcaagaggctc
cttcgtaagatcgaagtccttgagtcaaaattgctttctaatcctctgcacggttcgcca
cgcttaccggacttgtacgatcaatatgcagagaagattgacattggtcgcaagatcaag
gagaagaagaaggctgttactgccgccttgagcattatgcagctcgatgagcttaagtct
cgcaagcgtgtattgcgacgtcttggatttatcaacgaccaagaagttgtagagttgaag
gcccgtgttgcgtgcgagatatcttcgacaggtgatggccacgagcttcttctgtctgag
cttctcttcaatcgcttcttcaatgagctcagccctgaagtgtgtgcagcagtactctcg
tgcttcatcttcgaggagaagagtcaagctcccgagcccttgaaggaagaattgtcgaag
catttccgagagattcaggctcaagctagggttatcgcgaaggttagccaggagagcaag
attgaactcaacgagaaggaatatgtcgacagcttcaagtgggagctcatggacgttgtc
ttggcttgggcacagggtaaatctttcgctgaaatctgtaagatgacagatgtctacgaa
ggatctcttattcgccttttccgtcgacttgaagaactgcttcgacagatggcacaggct
ggcaaggtcatgggctccgacgagctagcagggaaattcgaagaatctcttgccaagatc
aggagggatatcgtcgcggctcagagtttgtacttgtaa
DBGET
integrated database retrieval system
