Mollisia scopiformis: LY89DRAFT_637805
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Entry
LY89DRAFT_637805 CDS
T04865
Name
(RefSeq) cleavage and polyadenylation specifity factor
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
psco
Mollisia scopiformis
Pathway
psco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LY89DRAFT_637805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psco03021
]
LY89DRAFT_637805
03019 Messenger RNA biogenesis [BR:
psco03019
]
LY89DRAFT_637805
Transcription machinery [BR:
psco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LY89DRAFT_637805
Messenger RNA biogenesis [BR:
psco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
LY89DRAFT_637805
U7-dependent histone pre-mRNA processing factors
LY89DRAFT_637805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
28821272
NCBI-ProteinID:
XP_018076175
JGI:
637805
UniProt:
A0A194XNJ6
LinkDB
All DBs
Position
Unknown
AA seq
816 aa
AA seq
DB search
MASKRKAAAMAPEEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHAGYEGL
ASLPYYDEFDLSTVDVLLISHFHIDHAASLPYVLAKTNFQGRVFMTHPTKAIYKWLVQDS
VRVGGASSSSQQVYSEADHLSTFPMIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEI
AGLKIFFTGDYSREDDRHLVSAEVPKGVKIDVLITESTYGIASHVPRVEREQQLMKSITG
ILNRGGRVLMPVFALGRAQELLLILDEYWGRHQEYQKYPVYYASNLARKCMLVYHTYVGA
MNDNIKRLFKERMAEAEASSDTAGRGGPWDFKYVRSLKNLDRFDDVGGCVMLASPGMLQN
GVSRELLERWAPSDKNGVIITGYSVEGTMAKQIMQEPDQIQAIMSRTTGGARRGPNAENE
KVTIPRRCSIQEFSFAAHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNADK
ANKVKVYSPKNCEIVRIPFRTDKMAKVVGKLADIPPPTSDANKSQLITGVLVQNDFKMSL
MAPEDLREFAGLTTTTIVCKQRMNLSAAGIDLIKWALEGSFGSIDELPESRSKLKMNGDT
HMNGSNEEADEEFSNLATVYLVMGCVIVRHKSNGEVEVEWEGNILNDGIADSVMGVLLSV
ESSPAAVKQSSSKHSHSHDLPSRNSHTDTNSTERLERLFMFLEAQFGADNVSPIELPKLK
SQPAITASLKQEKDEEAASDDSAEEEHTQLEVSQRKEIERLHKIGIPVPGVEVKVGNMAA
KVWLENLEIECPSRVLAERVRIVVERAVEVSAPLWV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaaacgcaaagccgccgcgatggcacctgaagagcccgtagatccctcagac
gagttgatgttcctgtgtttgggtggaggaaatgaagttgggagatcgtgtcatattata
caatacaagggaaagactgttatgctcgatgctggtcagcatgctggttacgaaggcctt
gcttcccttccttattacgatgaattcgatttgagcacggtcgatgtgctattgattagc
catttccacatcgaccatgccgcttctcttccttacgttctggccaagaccaacttccaa
ggacgagtcttcatgacacatcctacaaaggctatctataaatggcttgttcaggacagt
gttcgagttggcggagcctcgagttcttcccaacaggtatacagtgaagcggaccattta
tcaacattccccatgattgaagcgatcgactaccacaccacccataccatatcttccatt
cgaatcaccccttacccggctggccatgtgctcggcgctgctatgttcctcatagagatt
gctgggctcaaaatcttctttactggtgactactctcgagaagatgatcggcatttggtc
tctgcagaagttcccaaaggcgtcaagatagacgtgcttatcacagagtcaacatatggg
attgcttcacatgttcctcgagtggaaagggagcaacaactcatgaaatctatcacgggt
atacttaaccgaggaggtcgtgttctcatgcccgttttcgctttaggacgagctcaagag
cttttgttgatcttggatgaatattggggtcgtcaccaagagtatcaaaagtaccccgtc
tactatgccagtaatttagcccgaaaatgtatgttggtatatcatacatatgttggcgcc
atgaacgacaatatcaagcgtctgtttaaggagcgaatggctgaggcagaagcaagttcg
gacaccgctggtcgtggtggaccatgggattttaaatacgttcgatctttgaagaacctc
gatcgcttcgatgatgtgggaggatgtgtcatgctggcgagtcctggtatgcttcaaaat
ggtgtcagtagagaattgcttgagcgatgggctccaagtgacaaaaacggcgtgatcatc
acaggttacagcgtagaggggactatggcaaagcagatcatgcaagagccagaccagatc
caggcaatcatgtccagaacaacaggaggtgcacgtagaggtccgaatgcagagaacgaa
aaagtcacgattcctcggcggtgcagtatccaagagttttcgttcgcagcccacgtcgat
ggagttgagaacagggaattcattgaggaagtcgctgcgccggtagtgattcttgtccat
ggcgaagtgcacaacatgatgcgcttgaagtcgaagttgctttcactgaatgcagacaaa
gcaaacaaagtaaaagtctacagtcctaagaattgcgaaatagtacgtataccattcagg
acagacaaaatggccaaggtagtgggcaagctcgcagatattcctccaccaacctcagat
gccaacaaatcacaactcattaccggagtcctggttcaaaatgactttaagatgtctctt
atggcacccgaggacttgagagagtttgctggattgacaactacgaccatcgtctgcaaa
caacgcatgaatttaagtgctgcagggattgatttgatcaagtgggctttagaggggtcc
tttggcagcatagatgaattgcccgagagccgatcgaagcttaagatgaatggcgacacg
catatgaatggttcgaatgaagaggctgacgaggagttctcgaatctcgcgactgtctac
cttgtcatgggatgcgtaatcgtgcgtcacaaatccaacggagaggtagaggtggaatgg
gaaggcaacatacttaatgatggtattgctgattcagttatgggcgtactgctctcagta
gaaagcagtcctgctgctgtaaagcaatcctcgagcaaacactcccattcacacgacctc
ccatctcgaaactcacatacagacacgaactcaacggagcgattagagcgtctattcatg
ttcctagaagctcaattcggagctgacaacgtctctcccatcgaattaccaaaactcaag
tcccaaccagcaatcaccgcttctctgaaacaagagaaagacgaagaagcagcatcagac
gattccgcagaagaagagcacactcaactcgaagtctctcaacgcaaggaaatagagcgt
cttcataaaatcggcatcccagtcccgggcgtcgaagtcaaggtcggcaatatggcagct
aaggtctggctcgagaatctagagattgagtgcccaagtcgtgtgctggcagagcgggta
cggatagtggtggaaagagcagtggaggtctcggctcctttatgggtgtga
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integrated database retrieval system
