Pseudochrobactrum algeriensis: KHQ08_02470
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Entry
KHQ08_02470 CDS
T07380
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pscq
Pseudochrobactrum algeriensis
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pscq03016
]
KHQ08_02470
Enzymes [BR:
pscq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KHQ08_02470
Transfer RNA biogenesis [BR:
pscq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KHQ08_02470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
CNOT1_HEAT
Motif
Other DBs
NCBI-ProteinID:
QVQ36978
LinkDB
All DBs
Position
complement(118936..119556)
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AA seq
206 aa
AA seq
DB search
MTTIRVHKNDLPDLDNYQVDSVAIDTETLGLNPLRDRLCVVQISPGDGTADIIQIEKGLK
KAPNLVKLLKDRSITKIFHFGRFDLAVLAHTFGVMPQPVFCTKIASKLTRTYTDRHGLKE
ICSELLEVSISKQQQSSDWAAETLSQAQLEYAASDVLYLHRLKKVLEYRLQRDGREKQAE
ACFKFLPTRAELDLMGWDEQDIFAHA
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgacaactatccgcgttcataaaaacgatctgcctgatcttgataattatcaggtggat
tccgtcgctattgatacggaaacgctggggctcaatcctctgcgtgaccgtctgtgcgtt
gtgcagatttcaccgggtgacggcaccgcggatattattcagatcgaaaaagggctgaaa
aaagcccctaatctggtcaagctgctcaaagaccgttcgatcactaaaatcttccatttc
ggccgttttgatctggcagtgctggcacatacattcggcgtgatgccgcagccggttttc
tgcaccaagatcgcctctaaactgacccgcacctatacggatcgccacggcctgaaagaa
atctgctcggagcttctggaagtatccatttccaagcagcaacagtcttctgactgggca
gcggaaaccctgtctcaggcgcagcttgaatatgcagcgtccgatgttctctatctgcat
cgtctgaaaaaagttctggaatatcgtctgcaacgcgatggtcgcgaaaaacaggctgaa
gcctgctttaaattcctgccaacccgcgcagaacttgatctgatgggctgggacgaacag
gacattttcgcccacgcttag
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