Pseudochrobactrum algeriensis: KHQ08_02485
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Entry
KHQ08_02485 CDS
T07380
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pscq
Pseudochrobactrum algeriensis
Pathway
pscq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHQ08_02485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscq03019
]
KHQ08_02485
03009 Ribosome biogenesis [BR:
pscq03009
]
KHQ08_02485
Enzymes [BR:
pscq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KHQ08_02485
Messenger RNA biogenesis [BR:
pscq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHQ08_02485
Ribosome biogenesis [BR:
pscq03009
]
Prokaryotic type
rRNA helicases
KHQ08_02485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Snapin_Pallidin
Motif
Other DBs
NCBI-ProteinID:
QVQ36981
LinkDB
All DBs
Position
124820..126658
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AA seq
612 aa
AA seq
DB search
MTLPSTIAPALAGALKARGYEELTSVQEAMLTPDNDGRDLLVSAQTGSGKTVAFGIAMAA
DLLEQGDRLEAPRAPLALIIAPTRELALQVARELEWLYAPTGARITTCVGGMDIRTERRN
LERGAHIIVGTPGRLRDHITRRALNMSDLRAVVLDEADEMLDLGFREDLEFILGEAPEDR
RTLMFSATVSKSIALLAKRFQKDALRITATASHEKHADITYQAMIVPPHERENAIINTLL
YYDNVNTIIFASTREGVKHLASRLSNRGFSVVALSGELSQAERTNALQSMRDGRARVCVA
TDVAARGIDLPNLDLVIHADLPNNGETLLHRSGRTGRAGRKGTCILVVPFSRRRSAERLL
QMTRLDAKSIAAPTINAVQEKVREVILSNERLSDEIPEDMQELMRELQARYTPEQIAAAY
LRREIESRPAPEDVSEGPVRALGAPARERGERGERSERAPREDRSSFNGGAWFTLSAGRK
HRADPKWILPLICKAGQVSKGDVGAIRILENETRFEINSEKAKEYFATVEEQGTGEKGLV
IRTSTAPEQESRGPRSDRGGERRFDKRGGDDKPGWGAPKGKSRFKGGEGKPFGDKPKGPR
KPREGGDRKFSR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgccttctactattgcaccagcccttgccggtgcgctcaaagctcgtggctat
gaggaactgacctccgttcaggaagctatgctgacgcctgacaatgacggtcgcgatctg
ctggtttccgctcagaccggctccggtaaaactgttgcttttggtattgccatggcagct
gatctgctcgaacagggcgatcgtctggaagccccgcgtgcaccattggctctgattatt
gcgccgacacgcgaactggctttgcaggttgcccgcgagctggaatggctctacgcacca
accggtgcccgtatcaccacttgtgttggtggtatggatatccgcacagaacgccgcaat
ctggaacgtggtgcacatattatcgtgggtacaccgggtcgtctgcgcgatcatatcaca
cgccgtgcgctgaacatgtctgatctgcgtgctgttgtgcttgatgaagccgatgagatg
cttgatctcggcttccgcgaagatctggaattcattctcggtgaagctccggaagatcgc
cgcacactgatgttctcggcaacggtttccaaatcaatcgctttgcttgccaagcgtttc
cagaaagatgctttgcgcattactgcaaccgccagccatgaaaaacacgctgatattacc
tatcaggcaatgattgtgccgccgcatgagcgcgaaaacgcgatcatcaacacgctgctc
tattatgataatgttaacactattatctttgcttccacccgtgaaggcgtgaagcatctg
gcaagccgactgagcaatcgtgggttttcggttgtggcgctgtccggtgaattgtcacag
gctgaacgtaccaatgcgctgcaatccatgcgcgatggccgtgcccgcgtttgcgtagca
acagacgttgctgcacgcggtattgatctgccaaatcttgatctggttattcatgccgat
ctgccgaataatggtgaaacattgctgcaccgctccggtcgtaccggtcgtgccggccgt
aagggcacctgtattctggtggttcctttctcccgccgccgttcggctgagcgtctgctg
caaatgacacgtctggatgccaagagcattgcagcgccgaccattaatgcggttcaggaa
aaagttcgtgaggttatcctcagcaacgaacgtctcagcgatgaaattcctgaagacatg
caggaactgatgcgcgaattgcaggcgcgttatacgcctgaacagatcgcagccgcttat
ttgcgtcgtgaaatcgaaagccgtccggcaccggaagacgtgtctgaaggcccggtacgc
gctttgggcgcaccggcacgcgaacgtggtgaacgtggcgagcgctccgagcgtgctccg
cgtgaagaccgttcctccttcaatggcggtgcatggtttacactgtcggctggtcgcaaa
catcgtgccgatccgaaatggattctgccgctgatctgtaaagccggtcaggtttccaag
ggcgatgttggtgcaatccgtattcttgaaaacgaaacccgtttcgagattaacagcgaa
aaagccaaagaatattttgcgactgttgaagagcagggtacaggcgaaaaaggtctggtt
atccgcacttcaaccgcacctgagcaggaaagccgtggcccgcgttctgatcgcggtggc
gaacgccgctttgataaacgtggcggcgacgataagccgggctggggtgcaccgaaaggc
aagtcccgctttaaaggcggcgaaggcaagccttttggcgacaaaccaaaaggcccgcgc
aagccacgtgaaggcggcgaccgtaagttctcccgctga
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