Pseudochrobactrum algeriensis: KHQ08_05885
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Entry
KHQ08_05885 CDS
T07380
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pscq
Pseudochrobactrum algeriensis
Pathway
pscq02020
Two-component system
pscq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KHQ08_05885 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KHQ08_05885 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pscq03021
]
KHQ08_05885 (rpoN)
Transcription machinery [BR:
pscq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KHQ08_05885 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
DUF7645
HTH_3
2Fe-2S_thioredx
HTH_7
CARDS-D2_trefoil
DUF5846
Motif
Other DBs
NCBI-ProteinID:
QVQ37570
LinkDB
All DBs
Position
complement(919428..920738)
Genome browser
AA seq
436 aa
AA seq
DB search
MALSSKPVLRQTQSLTMTPQMQQSLKVLQMSRAELEDFVQSEIEANPLLQRAPSGALPSS
GVSEYSVEDFGSVQHSLQDHVAEQINLSIRDKTERHIAELLTETLDESGYLHADLVQIAK
RLNVTPEQVMRVLHQCQAFEPAGLFARNLAECLRLQLIADDRLTAEMAILLKHLDLVAKR
DFSALKKLCDTDDEELAELLGELRGLNPKPGLIFDSTPALTIIPDLLVAKTPNGEWNITL
NPQALPRVLMNEDYSRKLNDNSLSKEEKQFLRACKQKASWLTRILDQRAQTVFNVGEQII
THQQGFLKSGAVALKPLTMQMVADAIEMHESTISRVANQKYMLTPQGLFEYRYFFNSAIR
GKTGDDIASEAVRIKIRTLIAQENIDSILSDEAIVQKLDAEGIVIARRTVAKYREELGIP
SSAKRRREMKLHAQKR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggctctctcttccaagcccgttttgcggcagacccaatcactgactatgacgccgcaa
atgcagcaatcactcaaagtgctgcaaatgagccgtgctgagctggaagactttgtacaa
agtgaaatagaagccaatccgcttttgcaaagagcgccgtccggtgcgttgccctcctcc
ggcgtttcagaatattctgttgaagatttcggcagtgtgcaacattccctgcaagatcat
gtggccgagcagatcaatctgagtatcagagataaaaccgaacggcatattgccgagctg
cttaccgagactttggatgaatccggttatcttcatgcagacttggtgcagatcgccaag
cgcctgaatgtgacaccggaacaggttatgcgtgttctgcaccaatgtcaggcttttgaa
ccggcagggcttttcgcccgcaatctggcggaatgtctgcgtctgcaactcattgccgat
gatcgcctgactgcagaaatggccattctgcttaagcatcttgatctggtagcgaagcgt
gatttcagtgcgcttaaaaagctctgcgatacggatgatgaagaactggcagaactactg
ggcgaactccgtggtttgaaccccaaacccggtctgatcttcgacagcacacctgcgcta
accatcattcctgatttactggttgccaaaacaccgaatggcgaatggaacatcactctc
aatccgcaggctctgccccgtgtgctgatgaatgaggattatagccgtaaactcaatgac
aatagtctttccaaagaggaaaaacagtttctgcgagcctgcaaacaaaaggccagctgg
ctgacccgtattctcgatcaacgcgcgcagacggtgttcaatgtcggtgagcagatcatc
actcatcagcaaggttttctgaaaagcggggctgtggcgctcaaaccgctgacaatgcaa
atggtggcagatgcgattgagatgcatgaaagcaccattagccgcgttgccaatcagaaa
tatatgctgaccccgcaaggtctgtttgaatatcgctattttttcaactcggcgatcagg
ggcaaaaccggcgatgacattgcctcggaagctgtgcgcatcaaaatccgcacgctgatt
gcgcaggaaaacatcgacagcattctgtctgatgaggccatcgtgcaaaaacttgatgcg
gaaggtattgtgattgcccgccggacagttgccaaatatcgagaggaactcggcattccc
tcctccgcaaaacggcggcgggaaatgaaactgcatgctcaaaaaagataa
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