Pseudochrobactrum algeriensis: KHQ08_07285
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Entry
KHQ08_07285 CDS
T07380
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pscq
Pseudochrobactrum algeriensis
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pscq03016
]
KHQ08_07285 (rnd)
Enzymes [BR:
pscq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KHQ08_07285 (rnd)
Transfer RNA biogenesis [BR:
pscq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KHQ08_07285 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
CecR_C
Motif
Other DBs
NCBI-ProteinID:
QVQ37812
LinkDB
All DBs
Position
complement(1184360..1185514)
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AA seq
384 aa
AA seq
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MELITTTQGLEQAVSQLSKSDFVTVDTEFIRETTFWPELCLIQMASPDTTALVDALAPGI
DLSSFFALMADKSVVKVFHAARQDIEIVFHLGNLIPEPVFDTQVAAMVCGFGDAISYDQL
VARITGVNLDKSSRFTDWRRRPLSDKQLDYALADVTHLRDVYLYLQDRLTKEGRNDWVSE
EIRILTARETYDMHPDDAWKRLKIRLRKPAELAVMQKVAAWRERAARERNVPRGRVIKDD
TIQEIAQQQPRDAEALSRLRTIPKGWERSSHAQGLVEAINEALSIPKEDMPRLPKQYNAP
EGTGAASDVLKLLLKIITEDHGVAPKVVASSDDIDQIAAKGNAADVPALKGWRRELFGEK
ALQMIEGKIGIKFENRKIKAVPLD
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggaactcattacgacaacacagggtcttgaacaggccgtttcacagctttcaaaatct
gattttgtcactgtggataccgaattcattcgtgaaaccactttctggccggaactttgc
ctgatccagatggcatcgccggacacaacggcgttggtggatgcactggcgccgggcatt
gatctcagctctttcttcgccctgatggcggataaatctgtcgtcaaagtgtttcacgca
gcgcggcaggatattgaaatcgttttccacctcggaaatctgatccctgagccggtattc
gacacacaggttgcagcgatggtttgcggttttggcgatgccatttcttatgatcagctg
gttgcccgtatcaccggtgtaaatctggacaagtcgtcccgctttactgactggcgccgc
cgtccgctgagcgacaaacagctggattacgcactggccgatgtgacccatctgcgcgat
gtctatctctatttgcaggatcgcctgaccaaagaaggccgcaatgactgggtgagcgaa
gaaatccgcattcttaccgcccgcgagacctatgacatgcatcctgatgatgcgtggaag
cgtctgaaaatccgcctgcgcaagcctgccgaactggcagttatgcagaaggttgccgca
tggcgtgaacgtgcagcacgtgaacgcaatgttccgcgcggtcgtgtgattaaagacgat
acgattcaggaaatcgcccagcagcagccgcgcgatgcggaagcgttgtcccgtctgcgt
actattccgaaaggctgggagcgctcctctcatgcgcaagggctggttgaagcgattaat
gaagccctgagcattccgaaagaggatatgccacgcctgccgaagcaatataatgcgccg
gaaggcaccggtgcggcctcggacgtgctcaagctgctgctcaaaattattactgaagat
catggtgtagcaccgaaggttgtcgcctcttccgatgatattgatcagattgctgccaag
ggtaatgcagcggatgtaccggccctgaagggctggcgccgtgaattgttcggtgaaaaa
gcactgcaaatgattgaaggcaaaatcggcatcaaatttgaaaaccgcaagatcaaagca
gttccgctggattaa
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