Pseudochrobactrum algeriensis: KHQ08_07795
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Entry
KHQ08_07795 CDS
T07380
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pscq
Pseudochrobactrum algeriensis
Pathway
pscq03030
DNA replication
pscq03430
Mismatch repair
pscq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KHQ08_07795 (dnaE)
03430 Mismatch repair
KHQ08_07795 (dnaE)
03440 Homologous recombination
KHQ08_07795 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pscq03032
]
KHQ08_07795 (dnaE)
03400 DNA repair and recombination proteins [BR:
pscq03400
]
KHQ08_07795 (dnaE)
Enzymes [BR:
pscq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KHQ08_07795 (dnaE)
DNA replication proteins [BR:
pscq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KHQ08_07795 (dnaE)
DNA repair and recombination proteins [BR:
pscq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KHQ08_07795 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
T2SSK
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QVQ37894
LinkDB
All DBs
Position
1282773..1286276
Genome browser
AA seq
1167 aa
AA seq
DB search
MPLPSDVSAVAASELPAGAPVFIHLRTHSAYSLLEGALQIGKIIGHAKDDNAPAIAVTDT
NNLFGALEFAQKASKDGVQPIIGCVVDIAFGDHQPEGRAINRRDALDLSPVVLLASSEEG
YANMVRLVSRSYLETEAGDPVHIRADWLPDLSEDVIFLTGGAEGPIGIPLSNEREERARS
RLVFLKNIFGNRLYVELHRQRGYDRVLESKLVDLAYEYELPLVATNEAFFKQSGDYEAHD
ALLAIADGQVIASDDRRRLTPDHYLKSQSEMAALFADLPEALENTVEIARRCHWYTQTRA
PILPRFTGESDDPEAALQAEADEMARQAREGLEERLKLFGLAEGHTHEDYIKRLDYEIGI
IVRMKFPGYFLIVSDFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERF
LNPDRVSMPDFDIDFCQDRREEVIRYVQQKYGRDQVAQIITFGTLQARAVLRDVGRVLQM
PYGQVDRLCKLVPSNPANPVSLGQAINEEPRINEEREKEPVVGRLLDMSLKLEGLYRHAS
THAAGIVIGDRPLSELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLNTAV
KLIARKGVDIDLQTLPFDDQLTYEMLSRGETVGVFQVESVGMRKALIGMKPDRIEDIIAL
VALYRPGPMENIPTYNARKHGEEEIASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYS
LGEADLLRRAMGKKIREEMDKQRVRFVDGAIEGGVGKAQANTIFDLLAKFADYGFNKSHA
AAYAIVSYHTAYLKAHYPAEFLAASMTYDMNNTEKLNDFRRDALRLGIEVVLPSVMTSYR
PFEVGEGKIFYSLAAIKGVGDAAVEHIVEKRKEKPFESLEDFCERVDPRMVNRRVFESLI
NAGALDCFGVDRSALSSGMDSLMAYTQRTQENANSGQSDIFGTGLVPKEKLQLPVVTPWT
SSEKLHRELQAAGFYLSAHPLDDYNEALQKMRVQSWADFSNAVKKGATNGRLAGTVISKQ
ERKTKTGNKMGIIAFSDATGQFESVLFSEALQQFRDLLEPGRSVVITVSAENRPEGVSLR
IATVVSLEDEASRLQKALRLFLRNSDALDQIVPYFKTRGDGEVSFIVIKDNGQREVEVAL
PDRYRISPQIASAMKAISGVVDVELIS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgccttctgatgtttctgccgtagctgcttctgaattacctgccggtgcaccg
gtatttattcatttacgcacgcactcggcttattcattgctggaaggggcattgcaaatc
ggcaaaattatcggccatgccaaggatgataatgcgcctgcaattgctgtaacagacacg
aataatctcttcggcgcattggaatttgcgcagaaggcgtcgaaagatggtgtgcagccg
attatcggctgtgttgttgatattgcctttggcgaccatcagccggaaggccgtgcgatc
aaccgccgcgatgcgctggatttgtcgccggtggtactgctggcttccagtgaggaaggt
tatgccaatatggtgcggctggtcagtcgttcctatctggaaacagaagccggtgatccg
gtgcatatccgtgcggactggctgccggatttgtcggaagatgtgatttttctgaccggc
ggagcagaggggccgattggcataccgctcagcaatgaacgggaagagcgtgcgcgcagc
cgccttgtgtttttaaaaaacatctttggcaaccgtctttatgtcgaattgcaccgccag
cgcggttatgaccgtgtacttgaatccaaactggttgatctggcttatgaatatgagctg
ccgttggttgcaaccaatgaggcattcttcaagcagagcggagattatgaagcgcatgat
gctttgctggctattgcagatggtcaggtcatcgcatcggatgatcgtcgccgtctgacg
ccagatcattatttgaaatcccagagcgaaatggcggctttatttgccgatctgccggag
gctctggaaaataccgtcgagattgcacgtcgctgtcattggtacacgcaaacccgcgca
ccgattctgccacgctttaccggtgagtccgatgatccggaagccgctttgcaggcagaa
gcggatgaaatggcgcgtcaggcgcgtgaaggtcttgaggagcggttgaagctattcggc
cttgcggaaggtcatacccacgaggactatatcaagcggctggattacgaaatcggcatc
atcgtccgcatgaaatttccgggttacttcctgatcgtttcggactttatcaaatgggca
aagcagcaggatattccggtggggccggggcgtggttccggtgcgggttcgcttgtggct
tatgcgctgaccattaccgatgttgatccgctgcgtttctctttgctgtttgagcgcttt
cttaatccggatcgtgtgtcgatgccggactttgatatcgacttttgtcaggatcgccgt
gaagaggtgatccgctatgtgcagcagaaatacggccgcgatcaggtagcgcagattatc
actttcggtacgctgcaggcgcgtgcggtgctgcgcgacgttggccgcgtgctgcaaatg
ccttacgggcaggtcgacaggctgtgtaagctggtgccgtcgaaccctgccaatccggta
tcgctcggacaggctattaatgaagaaccgcgcattaatgaggagcgtgagaaggaaccg
gttgtcggtcgtcttctcgatatgtcgctgaagcttgaagggctttatcgccacgcctcc
acccacgcggcgggtattgttatcggtgaccggccattgtcggaactggtgccgatgtat
cgcgatccgcgctcagatatgccggtcactcagttcaatatgaaatgggttgaacaggcg
ggtctggtaaagttcgactttctgggtctgaaaacgctgacggtactcaatacagccgtg
aagctgattgcccgtaaaggtgtcgatattgacctgcaaacactaccgtttgacgatcag
ctgacctatgaaatgctgtcgcgcggtgaaacggtcggcgtgtttcaggtggaatctgtg
ggtatgcgtaaagcgcttatcgggatgaagcctgaccgtatcgaggatattattgcactc
gtggcgctctatcgcccgggtccgatggagaatattccgacctataatgcgcgtaagcac
ggtgaagaggaaattgcctctattcacccaaaaatcgaccatctggtgaaggaaacgcag
ggcgttatcgtttatcaggaacaggtgatgcagatcgcgcaggagctttccggctattcg
cttggtgaagcggatttgctgcgccgcgcgatgggtaagaagatccgtgaagaaatggac
aagcagcgcgtccgtttcgttgatggtgcgattgaaggcggcgtgggcaaggcgcaggcc
aatacgattttcgacctgcttgccaaatttgctgactatggtttcaacaaatcccacgcg
gcggcctatgcgattgtttcctatcatacggcctatctgaaggcacattatccggcagag
tttctcgccgcatccatgacctatgatatgaacaacacggaaaagctcaatgatttccgt
cgtgatgccttgcgtcttggtattgaggtggtgctgccatcggtcatgacatcctaccgt
ccgtttgaagtcggcgaaggtaagattttctattcgctggccgcgatcaagggcgtcggt
gatgcagccgttgagcatattgtcgaaaagcggaaagaaaagccgtttgaaagccttgaa
gatttctgcgagcgcgttgatccgcgcatggtcaaccgccgtgtgtttgaaagcctgatt
aatgccggtgcgctggattgtttcggtgttgaccgttcggctctgagttccggtatggac
agcctgatggcctatacccagcgcacgcaggaaaatgccaatagcgggcagtcggatatt
tttggtaccggtctggtgccgaaagaaaagctgcaattgccggtggtaaccccttggact
tcatcagagaaactgcatcgcgaattgcaggccgcaggcttctatctctccgcgcatccg
ctggatgattataatgaagcgctgcagaaaatgcgtgttcaaagctgggctgatttctcc
aatgcggtgaaaaagggcgcaaccaacggtcgtcttgccggaacggttatcagcaagcag
gagcgcaagaccaagaccggcaataagatgggcatcattgccttttctgatgcgacaggt
cagtttgaatcagtgcttttctcagaggcgctacagcagttccgcgacctgctggaaccc
ggtcgctcggtggtgattaccgtttccgctgaaaaccgaccagaaggtgtgagcctgcgt
attgctacagttgtgtcactggaagatgaggccagtcgcctgcaaaaagcgctgcgtctg
ttcctgcgcaacagcgatgcgctcgatcagattgtgccttatttcaaaacccgtggtgac
ggtgaggtcagctttattgtgattaaagataatggtcagcgcgaggtcgaagttgccttg
ccagaccgctatcgtatcagcccgcagattgccagcgcgatgaaggccatcagcggtgtg
gtcgatgtggaactcatcagctga
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