Pseudochrobactrum algeriensis: KHQ08_08960
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Entry
KHQ08_08960 CDS
T07380
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pscq
Pseudochrobactrum algeriensis
Pathway
pscq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHQ08_08960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscq03019
]
KHQ08_08960
Enzymes [BR:
pscq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KHQ08_08960
Messenger RNA biogenesis [BR:
pscq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHQ08_08960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Arabino_trans_N
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QVQ38094
LinkDB
All DBs
Position
1550600..1552192
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AA seq
530 aa
AA seq
DB search
MMRVSGSPDRRRISKAYILTNQNEPDLTAVAEIQETSGFAALGITGLLLKNLDAAGMTSP
KPIQQQSLPAQLKGKDILGIAQTGSGKTAAFSLPIIEQILALGDKRLPKTCRALILAPTR
ELAVQIEETVRVLTKGAHLSTALILGGVSRASQVRKMVPGVDILVATPGRLTDLVRDKCV
DLSATKWLVLDEADRMLDMGFINDVKRIAKATRSDRQTALFSATMPKEIVALAEGLLRDP
VRVEVSPAGTTAAEITQVVYTVPTKDKKKALSGLLTNPKLETVIVFTRTKHGADAVTRTL
EKDGYSVAAIHGNKSQNARQRALNGFKDRSVRVLIATDIAARGIDVPGISHVINYDLPDE
PESYVHRIGRTGRNGASGAAITLYDGGTEHAKLKAVERVIRNKLTLKDLPPQFGPLPERT
EKPTFEHEWPKPDPRAVGKRKTSRPYKNLDKAPQRTTGFSDVRELYDDAAPAKPREAKPA
QGERGRQNRNHSGRSGQGSGYNSGQANSGKPANKKTFHRNKKRAGQDWNS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtgtgtccggttctcccgaccggcggcgcatatcgaaagcttatattttgaca
aatcaaaatgaacccgacctgaccgctgttgcggaaattcaggaaacctccggctttgcc
gctttgggcattaccggtcttttgctgaaaaatctggatgcagcgggcatgacttcgcca
aagccaattcagcagcaatccctgccagcccagctgaagggcaaagacattctgggtatc
gcgcagaccggctccggcaagactgcggcgttctccctgccgattatcgagcagattttg
gcacttggcgataagcgcctgcctaaaacctgccgcgccctgatcctcgcgccaacccgc
gaactggctgtgcagattgaagaaaccgttcgtgtgcttaccaaaggcgcacatctttcg
accgctttgattttaggcggtgtctcccgcgcctctcaggtgcgcaaaatggtgccgggc
gtggatattctggtggcaacgccgggtcgtctgaccgatctggtgcgtgataaatgcgtt
gatctgtccgctaccaaatggctggtgctggacgaggccgaccgtatgctggatatgggc
tttatcaatgatgtgaagcgcattgccaaagcaacgcgctctgaccgtcagacagctttg
ttctcggctactatgcctaaggaaatcgtggctctggctgaaggcctgctgcgtgatccg
gtacgtgttgaagtttcgcctgccggtacaacagcggctgaaattacgcaggttgtttat
accgtgccgaccaaggataagaaaaaagcgctgtccggccttttgaccaatcctaaactg
gaaacagttattgtctttacccgcaccaaacatggcgcggatgcggtgacacgcacgctg
gaaaaagacggttattccgttgcagccattcacggcaacaaatcgcagaatgcccgtcag
cgtgcgctgaacggctttaaagaccgttccgtgcgtgtgctgattgctactgatattgct
gcgcgtggtattgacgttccgggcattagccatgtcatcaattatgacctgccggatgaa
ccggagagctatgtacaccgtatcggccgtaccggtcgtaatggtgcttccggtgcagcg
attacgctttatgacggcggtacagaacatgcaaagctcaaggctgttgagcgtgttatc
cgcaataagctgacactgaaagatctgccgccgcagtttggcccgttgcctgagcgcaca
gaaaagccaaccttcgagcacgaatggccaaagcctgatccgcgtgccgtcggcaagcgt
aaaacctcgcgcccgtataaaaatctggataaagcaccgcagcgtaccactggtttttcc
gatgtgcgtgagctttatgatgatgccgcacctgccaagccacgcgaagcaaaacctgca
cagggcgaacgtggccgtcagaaccgcaatcattccgggcgcagcggacagggttccggt
tataattccggtcaggccaatagcggcaagcctgcgaataaaaagaccttccaccgcaat
aagaaacgtgcgggtcaggattggaacagctaa
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