Pseudochrobactrum algeriensis: KHQ08_17320
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Entry
KHQ08_17320 CDS
T07380
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pscq
Pseudochrobactrum algeriensis
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pscq03400
]
KHQ08_17320 (addA)
Enzymes [BR:
pscq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KHQ08_17320 (addA)
DNA repair and recombination proteins [BR:
pscq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KHQ08_17320 (addA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QVQ36805
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All DBs
Position
3330969..3334496
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AA seq
1175 aa
AA seq
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MKPKIIPQETIDAQAKAANPYDSVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTY
TKAAAAVMQNRVFQRLSEWAVLDDEGLSKKLKDLEKREPDAIRLEIARRLFARALETPGG
LKIQTIHAFCESILHQFPLEANIAGHFEMLDDMMQTALVGEARRQLLEVASTSAHAGLAE
AFATVLETAGEMGLENLLDEAVSKRHALHGFIRQTGVAETRQDVFYRHFGFDPDDTEADI
LSDLWPVAEFSDDVLDAVMNLRKPAARAQDVVLQLRMIKPQTTPAQMQDILRKAFLKSTG
EPKNGSWVATAAVKAELPDFEDDFNRVVADIHEGLDRLKLLKLIRLNLAAFTLIDDLLSR
YEKMKRNRGLLDFDDLINRTVSLLSRNGAGMWVQYKLDRGIDHILVDEAQDTSPEQWQVI
NMLSAEFFSGSGQRDVRRTLFAVGDEKQSIYSFQGARPEDFAATGKAVSRMAARAELSFE
KVSLNFSFRSTPDVLSAVDTVFSREEAFRGLGIERQPTVHAAIRSNDAGEVEVWDILTPE
KVEEVEDWRTPIDQLPAPAVKLAEQIATTIRHWLDTGEPIHGKGRRMEPRDIMVLVRKRD
LFMPALSRALKNRGVPVAGADRLRLTSHIGIKDLMAVGRFVLQPADDLSLASVLKSPLFG
LTEEQLYRLAQPRGTKQTLYAAMEKLGESDAPDAGAWQVLYTKLRRWRNMADTMPVFEFY
ARILGQDGGRRKLLARLGPEAGDVIDEFQNYALATERSGLPGLQAFLETLEAASPEIKRE
LDQNRDEVRIMTVHASKGLEAAVVFMVDPGNAAWSAGRAPKLLSFDMAEPDGYEGKGFLW
LPKSDYGTGFTAELLEELKTRSEEEYRRLLYVGMTRAEDRLILCGYRGERESENTWLKLA
SDGLGDEAVAYDHPVEGVSARRYRKTELAELEMQDKADAAETAYPPLPEHYRRPLEPEQG
LPRPLTPSGASALIEADAEQVVRSGSPVLEQGAQTEGSGRSFGLQRGTVIHTLLQRLPDL
PAEQREQAAQRYLNIAAGDWHETQREKALAAVSTILNDPQFAAVFSPASKAEVSLMGKLQ
LRGKEQVVSGQIDRICVEDDRVLIVDYKSNRPPARTQQEVPQAYITQLALYRALVEPLYP
HKRVEAALLFTEGPHLIVLDEDVMEQALIALGKAV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctaaaatcatcccgcaggaaactattgatgcacaggccaaggctgcaaaccct
tacgattccgtctgggtatcggccaatgccggttccggtaaaacccatgtgctgacagaa
cgggtgatccggctgctgctggagggcacagacccgtcaaagatcctttgtctgacctat
accaaagccgcagcggcagtgatgcagaaccgtgtttttcagcggctctcggaatgggca
gtactggatgatgagggactgagcaaaaaactcaaagatctggaaaagcgtgagcccgat
gcaatccgtcttgaaattgcacgacgtttgtttgcccgtgctttggaaacaccgggcggt
ttgaaaattcagaccattcacgctttttgtgaatccatcctgcaccagtttccgctcgaa
gcgaatattgccggtcattttgaaatgctcgacgatatgatgcagacggcactggtgggc
gaagcacggcggcaattgctcgaagtggcttccacctctgcccatgcgggtctggctgaa
gcttttgccacggtgctggaaaccgccggtgaaatggggctggaaaatctgctggatgaa
gcggtgtccaaacgccatgctttgcatggatttatccggcagaccggtgttgcggaaacc
cgtcaggatgttttctatcgtcatttcggcttcgaccccgatgatactgaagccgatatt
ctctccgatctctggccggtggctgagttttccgatgatgtgctggatgcggtgatgaat
ttgcgcaagcctgctgcccgtgcgcaggatgttgtgctgcaattgcggatgattaaaccg
cagaccacaccggcacagatgcaggatattctgcgcaaggcatttcttaaatccacaggc
gagccgaaaaacggctcatgggtggcgactgctgcggtcaaagcggagctaccggatttc
gaagacgactttaatcgtgttgttgccgatattcatgaagggctcgaccggcttaaattg
ctgaagctgatccggctcaatcttgcagccttcacgctgattgatgatctgctgtcgcgt
tatgagaagatgaagcgcaatcgtggattgctggattttgacgatctgatcaaccgcaca
gtctcgctgttgtcacgcaacggcgcgggcatgtgggtgcagtataagctcgaccgcggt
attgatcatattctggtagatgaggcgcaggataccagccctgaacagtggcaggttatc
aatatgctctccgccgagttcttttccggctcggggcagcgtgatgtgcgccgtaccctt
ttcgcagtgggcgatgagaaacagtcgatctattcgtttcagggcgcacgtcctgaggat
tttgccgcgaccggtaaagctgtttcccgcatggcagcccgtgcggaattgagctttgaa
aaagtcagtctcaacttctctttccgctcgacaccggatgttttgtcggcagtggatacg
gtgttttcgcgcgaagaggcttttcgtggacttggcatcgagcggcagccgaccgttcat
gctgcgatccgttccaatgatgccggtgaggttgaggtctgggatattctgacgccggaa
aaggttgaagaggttgaggactggcgcacgccgattgaccagttgcctgcaccggccgtc
aagctggccgagcagattgccaccaccatacgccattggctggatacaggcgagcctatc
catggcaaggggcggcgcatggagccgcgcgatattatggtgctggtgcgcaaacgtgat
ctgttcatgccagcactttcccgtgccttgaaaaatcgcggtgtgccggtggccggtgct
gaccgcttgcgcctcaccagccatatcgggattaaagacctgatggctgtcgggcgtttt
gtgctgcaaccggccgatgatttgtcactggcaagtgtgctgaaaagcccgctctttggt
ttgaccgaggagcagctttatcgtcttgcgcagccgcgcggcaccaagcagacgctttat
gccgcgatggaaaagctgggtgaaagcgatgcgccggatgcgggcgcatggcaggtgctg
tacacaaaactgcgccgctggcgcaatatggccgatacaatgccggtctttgagttctat
gcccgtattcttggacaggatggcgggcggcgtaaattgctggcgcggctcgggccggaa
gccggtgatgtgatcgacgagtttcagaactacgctttggcaaccgagcgcagtggcctg
cctgggctacaggcttttttggaaacgctggaggcagcttcaccggagatcaagcgcgag
ctggatcagaaccgcgatgaagtgcgtatcatgacggttcatgcctccaaggggctggaa
gcggctgtggttttcatggttgatcctggtaatgccgcatggtcggcagggcgtgcacca
aagctgctgagctttgatatggctgagccggacggttatgagggcaagggctttctctgg
ctgccgaaaagcgattacggcaccggttttactgcggagctgctggaagagcttaaaacc
cgctctgaggaagaatatcgccgcctgctttatgtcggcatgacccgtgcggaagaccgg
ctgatcctgtgcggttatcgcggtgagcgcgagagcgaaaacacatggttgaaactggcc
tctgacgggctgggtgatgaggccgtggcctatgatcatccggtggaaggtgtgagcgca
cggcgttatcgcaagacagaactggcagaactggagatgcaggataaagcggatgcggct
gagaccgcctatccgccattgcctgagcattatcgcaggccgctggagccggagcagggg
ctgccgcgtccgctgacgccatccggcgcttctgcactgattgaggctgatgcggagcag
gttgtacgcagcggttcgcccgttctggagcagggcgcacagactgagggcagtggccgc
agctttggtttgcaacgcggaacggtaattcacacattgctgcaacgtttgccggatttg
cctgcggaacaacgcgagcaggcggcacagcgttatctgaatattgctgccggcgattgg
catgaaacgcagcgtgagaaagcattggcagcggtcagcactattctgaatgatccgcaa
tttgctgcggtattttcacccgcttccaaagcggaagtctcattgatgggtaagctgcaa
ttgcgcggcaaggaacaggttgtttccggccagatcgaccggatttgtgttgaagacgac
cgtgtgctgattgtggattataaaagcaaccgtccgccagcccgcacgcagcaggaagtg
ccgcaggcctatatcacgcagcttgcactgtatcgtgcgctggttgagccgctttatccg
cataaacgtgttgaggctgcattgctgttcactgaagggccgcatctgattgtgctggat
gaggatgtgatggaacaggcactgattgctctgggcaaggctgtatga
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