Pseudochrobactrum algeriensis: KHQ08_17625
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Entry
KHQ08_17625 CDS
T07380
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pscq
Pseudochrobactrum algeriensis
Pathway
pscq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHQ08_17625 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pscq03019
]
KHQ08_17625 (pnp)
03016 Transfer RNA biogenesis [BR:
pscq03016
]
KHQ08_17625 (pnp)
Enzymes [BR:
pscq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KHQ08_17625 (pnp)
Messenger RNA biogenesis [BR:
pscq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KHQ08_17625 (pnp)
Transfer RNA biogenesis [BR:
pscq03016
]
Prokaryotic type
tRNA degradation factors
KHQ08_17625 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QVQ36860
LinkDB
All DBs
Position
complement(3395001..3397142)
Genome browser
AA seq
713 aa
AA seq
DB search
MFNTHKVEIEWGGRPLILETGKVARQADGAVIATYGETMVLATVVSAKEPKPGQDFFPLT
VNYQEKAYAAGRIPGGYFKREGRPSENETLVSRLIDRPIRPLFADGYKNDTQVVITVIQH
DLENNPDVLSMVAASAALTLSGVPFMGPIGGSRVGYINGEYVLNPHLDEMAESKLDLVVA
GTSDAVLMVESEAQELSEEVMLGAVVFGQKGFQPVIDAIISLAEVAAKEPRDFQPEDLSA
PEAAMLAIIEDDLRAAYKIIDKQARYTAVDAAKAKVKAHFLPEDAETTEYTAEQIGTVFK
SLQAKIVRWNILDTGSRIDGRDLVTVRQIVSEVGVLPRTHGSALFTRGETQAIVVATLGT
GEDEQFIDTLAGLQKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAK
EQFPYTLRAVSEITESNGSSSMATVCGTSLALMDAGVPLTRPVAGIAMGLIKEGDRFAVL
SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKTALEQAKGGRVHILGEMA
KALSGARAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA
SSSAKEIEAAKKWIHSIVAEPEIGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR
VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIVAEKKEETAAE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacactcataaagttgaaatcgaatggggcggccgtccgctcattctcgaaacc
ggcaaagtcgcccgtcaggcagacggcgcggttatcgccacttacggtgaaacaatggtg
ctggccaccgtcgtttcggctaaagagccaaagccgggtcaggacttttttcctctgact
gtaaactatcaggaaaaagcctatgcagccggtcgtattcctggcggttatttcaagcgt
gaaggccgtccgagcgaaaacgaaactctggtttcccgcctgatcgaccgtccgatccgt
ccgctgtttgctgatggctacaaaaacgacacacaggttgttatcaccgttattcagcat
gatctggaaaataatccggacgttttgtcgatggttgccgcttccgctgcgctcaccctt
tccggcgtacctttcatgggcccgatcggtggttcgcgcgttggctacatcaacggcgaa
tatgttctgaacccgcatctcgacgaaatggctgaatccaaactggatctggttgttgcc
ggtacttctgatgctgttctgatggttgaatccgaagcgcaggaactttctgaagaagtc
atgctcggcgctgttgttttcggtcagaagggcttccagcctgtgatcgatgcaatcatc
agccttgctgaagttgctgcaaaagaaccacgtgacttccagccggaagacctgtcggct
cctgaagccgcaatgctggcaatcatcgaagatgatctgcgcgcagcttacaaaatcatc
gacaagcaggctcgttataccgctgttgatgctgccaaagctaaagttaaagcgcacttc
ctgccggaagatgcggaaacaaccgaatatactgctgagcagatcggtactgttttcaaa
tcgctgcaggctaaaatcgttcgctggaacattctggataccggcagccgcatcgacggc
cgcgatctggtaaccgttcgtcagatcgtatccgaagttggcgttctgccacgcacacac
ggttcggctctgttcacccgcggtgaaacacaggcaatcgttgttgcaacactgggtacc
ggtgaagatgaacagttcatcgacacgctggccggcctgcagaaagaatccttcctgctg
cactacaacttcccgccatattccgttggtgaaaccggccgtatgggttcccctggccgt
cgtgaaatcggtcacggcaaactggcatggcgcgcaatccatccgatgctgcctgccaaa
gaacagttcccgtacactctgcgtgcggtttctgaaatcactgaatccaacggttcgtcc
tccatggcaaccgtatgcggcacctcgctggcgctgatggatgccggtgtacctctgacc
cgccctgtagccggtattgctatgggtctgatcaaagaaggcgaccgttttgcagttctt
tccgatatccttggtgacgaagatcacctcggcgatatggacttcaaggtagccggcact
gaaaacggtatcactgctctgcagatggacatcaagatcgacggtattaccgaagagatc
atgaaaaccgctctggaacaggctaaaggcggccgcgttcatattctcggtgaaatggcg
aaagcactgtccggcgcgcgcgctgaactcggtgaatttgcaccacgcatcgaagtgatg
aacattccgaccgacaagatccgtgatgttatcggttccggcggtaaagttatccgcgaa
atcgttgaaaagaccggcgccaaaatcaacatcgaagatgacggcacagtcaaaattgct
tcttcttccgccaaggaaatcgaagcagcgaagaaatggatccactccattgttgctgaa
ccggaaatcggcgaaatctacgaaggtacagttgttaaaactgctgacttcggtgcattc
gtaaacttcttcggcccgcgcgatggtctggtacatatctcgcagctggctgcagaccgc
gttgccaagaccaccgatgtggttaaggaaggccagaaggtctgggttaaactgatgggt
tttgatgagcgcggtaaagtgcgcctgtcgatgaaagtcgttgatcaggaaaccggcaag
gaaatcgttgccgaaaagaaagaagaaaccgcagctgaataa
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