Pseudoxanthomonas spadix: DSC_00355
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Entry
DSC_00355 CDS
T01643
Name
(GenBank) transcription termination factor rho protein
KO
K03628
transcription termination factor Rho
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC_00355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psd03021
]
DSC_00355
03019 Messenger RNA biogenesis [BR:
psd03019
]
DSC_00355
Transcription machinery [BR:
psd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DSC_00355
Messenger RNA biogenesis [BR:
psd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSC_00355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
Spore_III_AA
AAA_22
OB_RNB
S1CSD-TOTE-2
Mor
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AER54724
UniProt:
G7US55
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All DBs
Position
3307649..3308929
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AA seq
426 aa
AA seq
DB search
MPEGFPQYSLSDLKRMPAFKLLDIADQLQIQEGVARARKQDVIFALLKVLTRHGEGVAAD
GVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFA
LSIVDTINGEPIEASKGKVLFENLTPLFPRKRFTLERGNGSSEDISGRILDLMAPQGKGQ
RALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRTVRGEVISSTF
DEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAN
ALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRIAEK
RVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFMLDKMKNTKSNDEF
FSSMKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaaggcttcccgcagtattcgctgagcgacctcaagcgcatgccggccttcaag
ctgctggacatcgccgaccagctgcagatccaggaaggcgtggcccgcgcccgcaagcag
gacgtgatcttcgccctgctcaaggtgctgacccgccatggcgaaggcgtcgccgccgac
ggcgtgctggaaatcctgcccgatggctttggcttcctgcgcgcggccgaggccagctat
ctggccggcccggatgacacctacatctcgcccagccagatccgccgcttcaacctgcgc
accggcgatcacctctccggccgcatccgcttccccaaggacggcgagcgctacttcgcc
ctgtcgatcgtggacaccatcaacggtgagccgatcgaggccagcaagggcaaggtcctg
ttcgagaacctgaccccgctgttcccgcgcaagcgcttcacgctcgagcgcggcaatggc
tcctcggaggacatttccgggcgcatcctcgacctgatggcgccgcagggcaagggtcag
cgcgcgctgatcgtgtccccgcccaaggccggcaagaccatgctgatgcagcaggtggcc
accgccatcaccaccaatcatcccgacgtgcacatgatcgtgctgctgatcgacgagcgt
ccggaagaagtgaccgagatgcagcgcaccgtgcgcggcgaggtcatcagctcgaccttc
gacgaaccggccgcgcgccacgtgcaggtcgccgagatggtgatcgagcgcgccaagcgc
ctggtcgagcacaagaaggacgtggtgatcctgctcgactcgatcacccgcctggcccgc
gcctacaacaacgtggtgccgtcctcgggcaaggtcctgaccggcggcgtcgatgccaac
gcgctgcatcgtcccaagcgcttctttggcgctgcgcgcaacgtcgaggaaggggggagc
ctgaccatcatcgccaccgcgctggtggagaccggcagcaagatggacgaggtgatctac
gaggagttcaagggcaccggcaactccgaagtgcacctgaaccgccgcatcgccgaaaag
cgcgtctacccggccatcgacatcaaccgctcgggtacccgccgcgaggacctgctgatc
gagccggagctgctgcagaagatctggatcctgcgcaagctgctgcacccgatggacgag
atcgccgcgatggagttcatgctggacaagatgaagaacaccaagtccaacgacgagttc
ttcagttcgatgaagcggtaa
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