Pseudoxanthomonas spadix: DSC_01165
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Entry
DSC_01165 CDS
T01643
Name
(GenBank) exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DSC_01165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psd03400
]
DSC_01165
Enzymes [BR:
psd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DSC_01165
DNA repair and recombination proteins [BR:
psd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSC_01165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
DUF3782
NNH6
Motif
Other DBs
NCBI-ProteinID:
AER54886
UniProt:
G7UTI5
LinkDB
All DBs
Position
38088..41549
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AA seq
1153 aa
AA seq
DB search
MSHHAPMQDARPDFRLYPANSLEVLAGLLAAELRQPVPGQSLLAPEVVLIPQVAMRRWLQ
ATLAAAHGVAANLLFLTPGEFVARALQANLGPAHDELDAASLHWRLYAALTDPAVLAQPA
LAALRAYLSGDDALKPWALAGELAGVFEKYQAWRRDWLLRWEAGADPHDPQALLWRQVAG
GQGHRARRVQAYLERFGGDTAALPVGLPRRVFAFATLNISPDVLRVLATQARVGTLHFYL
PTPAQGYWGDLQALAPRRRARGDDRAEPDLFDGHTGENPLLQAWGAAGRDFMAMLGGYEV
VHPRAEIEVYADPIASGQRPLAQGGLGDSLLRRMQSDLFRRVRPAVPAPLPALDRTDPSL
QVHASHTRLRELQVLHDQLRGLLEDPRFDPPLQPRQIAVLAPDIDPYVPYLEAVFGGSKP
GSESSFGQKLDSDPGFDPGFARIGYALADTSPLAGEPLAEVFVRLLGLPVSRFGLNETLD
LLASPPLAEAAGLDAAAFERLHGWLQAAGARWGLDAEHRARHAAPRDDAYTWQFALDRLL
LGHASGSEQDIAGLAPWPALEGSALSALDALIRLLRVLSRAQQALAEAMPPQAWRERLLG
LLDALLPQPPSAPGTQRALDRLRKLIDAFASAAQRAGFDAPLPAEVVRAHFAGVLAEADT
RAPLLTGGVSIGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRLTAQLGTDQRRYGD
RSTREDDRFLFLQLFASAQDVFYVSYLGADPRDGSVREPSVLVSELIAAAADYHADPGQA
AAAMTVRHALQPFAPAAFGADGDPRQFSYRGQWQPGAGRLGGRRTRLGPWCDAALPAGDA
LETRVSIDALKRLLIAPAEQFLSQRLGLRLAEQIETGEDLEPLLMPGAGLEKHALQQAVF
AALLEDRQAGLAARLRARALLPSGALGRRALEGLLEQTQPYAQAFRHWRGTAQPEARLLE
VDLDGLVLHGRLGELYSHGLARMRLGPVSGVSAIRDGLDWLLASAAGLPQPLVQFDDRGD
AGAGPFLREPLDAAQARLVLRMLLQLRADGLQSPLPFAPYSGWEYFNAQTAEQALRRAAG
KWRGGERQWAEGSANSYQLALRGRDPFADPRTLQQFAHLSFTIYQAVTRGVIHEGFDDGR
SFVAEADEAQEDA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatcatgcgccgatgcaggacgcgcgcccggatttccgcctttatcccgccaat
tcgctcgaggtgctggccggcctgctggcggccgaactgcgccagccggtgccgggccaa
tcgctcctggcgccggaggtggtgctgatcccgcaggtggcgatgcgccgctggctgcag
gccaccctggccgccgcccatggggtggccgccaacctgttgttcctgacccccggcgaa
ttcgtcgcccgcgcgctgcaagccaatctgggccctgcccatgacgaactggacgcggcc
agcctgcactggcgcctgtatgcggcgctgaccgacccggccgtgctggcccagccggcg
ctggccgcgctgcgcgcgtacctgtccggcgacgatgcgctcaaaccctgggcgctggcc
ggggaactggccggggtgttcgagaaataccaggcctggcgccgcgactggctgctgcgc
tgggaggccggcgccgatccgcacgatccgcaggcgctgctgtggcggcaggtggccggc
ggccagggccaccgcgcgcggcgcgtccaggcgtacctggagcgcttcggtggcgacacg
gccgccttgccggtgggcctgcccaggcgggtgttcgccttcgccacgctcaacatctcg
ccggacgtgctgcgggtgctggcgacccaggcgcgggtgggcaccctgcacttctacctg
cccaccccggcacagggctactggggcgacctgcaggcgctggcgccgcgccggcgcgcg
cgcggcgatgaccgcgcagagccggacctgttcgacggccacaccggcgaaaacccgctg
ctgcaggcctggggcgcggccgggcgcgacttcatggcgatgctcggtggctacgaagtg
gtccatccgcgcgccgagatcgaggtctacgccgacccgatcgcctccggccagcgcccg
ctggcccagggcggcctgggtgacagcctgctgcggcggatgcagagcgacctgttccgg
cgcgtgcgaccggccgtgccggcgccgctgccggcgctggaccgcaccgatcccagcctg
caggtccacgccagccacacccgcctgcgcgagctgcaggtgctgcacgaccagctgcgc
ggcctgctcgaggacccgcgcttcgatccgccgctgcagccgcgccagatcgcggtgctg
gcgccggacatcgacccctacgtgccgtatctggaagcggtgttcggcggatcaaaaccg
gggtcagagtcgagtttcgggcagaaactcgactctgaccccggttttgaccccggtttt
gcacgcattggctacgccctggccgacaccagtccgctggccggcgagccgctggccgag
gtgttcgtgcgcctgcttggcctgccggtctcgcgcttcggcctgaacgaaaccctggac
ctgctggccagcccgccgctggccgaagccgccggactggatgcggccgccttcgagcgc
ctgcatggctggctgcaggccgccggcgcgcgctggggcctggatgccgagcatcgcgcc
cggcacgccgcgccgcgcgatgacgcctacacctggcagttcgcgctggatcggttgctg
ctgggccatgccagcggcagcgagcaggacatcgccgggctcgccccgtggccggcgctg
gaaggcagcgcgctgtcggcgctggatgcgctgatccggctgctgcgggtgctgtcgcgg
gcgcagcaggcactggccgaggcgatgccgccgcaggcctggcgcgaacgcctgctcggc
ctgctcgatgcgctgctgccgcaaccgccctcggcgccgggcacgcagcgcgcattggac
cgcctgcgcaagctgatcgacgccttcgccagtgccgcccagcgcgccggcttcgatgcg
ccgctgccggccgaggtggtgcgtgcgcattttgccggcgtgctggccgaggccgacacc
cgcgcgccgctgctcaccggcggggtcagcattggccgcatggtgccgatgcggttgttg
ccgttccgggtgatctgcctgctggggatgaacgatggcgacttcccgcgccgcgatccg
gccgctgggctcaaccggctcaccgcccagctgggcaccgaccagcgccgttacggcgac
cgctccacgcgcgaggacgaccgcttcctgttcctgcagctgttcgcctcggcgcaggat
gtgttctacgtcagctacctgggcgccgacccgcgcgatggcagcgtgcgcgagccgtcg
gtgctggtcagcgagctgatcgccgcggcggcggactatcacgccgatccgggacaggcc
gccgcggcgatgaccgtgcgccatgcgctgcagccgttcgcgccggccgcgttcggcgcc
gatggcgacccgcgccagttcagctaccgcggccagtggcagccgggcgccgggcgcctg
ggcggcaggcggacaaggctggggccgtggtgcgatgcggcgctgcccgcaggcgatgcg
ctggagacgcgggtctcgatcgacgcgctcaagcgcttgctgatcgcaccggccgaacag
ttcctgagccagcgcctgggcctgcgcctggccgagcagatcgaaaccggcgaagacctc
gagccgctgctgatgcccggcgccgggctggagaaacatgcgctgcagcaggccgtcttt
gcggccctgctggaggaccggcaagccggcctggccgcgcgcctgcgcgcccgcgcgctg
ctgccctccggcgccctgggccgacgtgcgctggaaggcctgctggaacagacccaaccc
tacgcgcaggcattcaggcactggcgtggcaccgcccagcccgaggcgcgcctgctggaa
gtggacctggatggcctggtcctgcatggccgactcggcgagctgtattcgcatggcctg
gcgcgcatgcgcctgggcccggtgagcggcgtcagcgcgatccgcgacggcctggactgg
ctgctggccagcgccgccgggttgccgcagccgctggtgcagttcgacgatcgtggcgat
gcaggcgcaggtccgttcctgcgcgagccgctcgatgccgcgcaggcgcgcctggtgctg
cgcatgctgctgcagttgcgcgccgatggcctgcagtcgccgctgccgttcgccccctac
agcggctgggagtacttcaacgcccagaccgccgaacaggccctcagacgtgctgccggc
aaatggcgcggcggcgagcgccagtgggccgagggcagtgccaacagctaccagctcgcc
ctgcgcggccgcgatccgtttgccgatccccgcaccctgcagcagttcgcccacctcagc
ttcaccatctaccaggcggtgacgcgcggggtgatccatgaaggattcgacgatggccgc
agctttgtcgccgaagccgatgaagcacaggaggacgcatga
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