Pseudoxanthomonas spadix: DSC_01360
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Entry
DSC_01360 CDS
T01643
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSC_01360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psd03400
]
DSC_01360
Enzymes [BR:
psd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DSC_01360
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DSC_01360
DNA repair and recombination proteins [BR:
psd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DSC_01360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AER54925
UniProt:
G7UTM4
LinkDB
All DBs
Position
84005..84817
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGLAPHLEGVIVRAVLQRRDDLRWPIPDQIRAHLPGARIEAVRRRAKYL
LLDTLAGSALLHLGMSGSLRVLPAATPVKAHDHVDLALDGGRVLRFNDPRRFGSLLWQAP
GTTHPLLQGLGPEPLSEEFDGAWLFARSRGRSAPVKSFLMDQRIVVGVGNIYAAESLFRA
RIHPLRAAGRVSRERYEALAMAVKDILAHAIQRGGTTLRDFISPDGVPGYFEQELWVYGR
GGLPCKRCAAALKQAQVGQRTTVWCPHCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaagtcgaaaccacccgccgcggcctggccccgcacctggaaggg
gtgatcgtgcgcgcagtcctgcagcgccgcgacgacctgcgctggccgatccccgaccag
atccgcgcgcacctgcccggggcgcggatcgaggcggtgcgtcgccgcgccaagtacctg
ctgctggacaccctggccggcagcgcgctgctgcacctgggcatgagcggcagcctgcgg
gtgctgccggcggccacgccggtgaaggcgcacgaccatgtcgacctggccctggatggc
gggcgggtgctgcgcttcaacgatccgcgccgcttcggcagcctgctgtggcaggcgccg
ggcaccacccacccgctgctgcaggggctgggaccggagccgctgtcggaggagttcgat
ggtgcatggctgtttgcacgcagccgcggccgcagcgccccggtcaagagcttcctgatg
gaccagcggatcgtggtcggggtgggcaacatctacgcggccgaaagcctgttcagggcc
aggatccacccgctgcgcgcggccggcagggtctcccgcgaacgctatgaagccctggcg
atggcggtaaaggacatcctggcccacgccatccagcgcgggggcaccaccttgcgcgat
ttcatcagccccgatggcgtgccgggctatttcgagcaggaactgtgggtctacggccgc
ggcggcctgccctgcaagcggtgcgcggccgccctgaagcaagcccaggtcggccagcgc
accacggtctggtgcccgcactgccagcgctga
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