Pseudoxanthomonas spadix: DSC_04740
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Entry
DSC_04740 CDS
T01643
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DSC_04740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psd03021
]
DSC_04740
Transcription machinery [BR:
psd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DSC_04740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AER55601
UniProt:
G7UPR1
LinkDB
All DBs
Position
813810..815675
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AA seq
621 aa
AA seq
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MANERPAQASDIKLLISKGLEQGYLTYAEVNDHLPDDMVDPEQIEDIIGMINGMGIAVHE
VAPDAETLLLAGEASGNREVDETAAEEAAAALTSLDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLGKVQASLGLLPSIIESVLEDYELHKAGKKRLAEVIVGFNDQVDEP
EPPAVVADAVDATDEADAESVDEEVDEDAAEEEAGPTGPDPEEVARRMEVLASTLAKFKK
GYAKAGADNKAGAKLRAEMADMFVTLKLPLALTDTLVKNVREVLQQIKDQERRVLHLSTV
TAKMPRKDFIRSWEGNQTNLEWVDEALKRKQKWSSGLREVKDQIIAEQRATIAVEQAMFM
SLAELKDISRQMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQ
YGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPVE
NTTNINLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSETLRSFLDID
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccaggcatccgacatcaagctgttgatcagcaaaggcctc
gaacaaggctacctgacctatgccgaggtcaatgatcacttgcccgacgacatggtcgac
ccggagcagatcgaagacatcatcggcatgatcaacggcatgggcatcgctgtccatgaa
gtggccccggacgccgagaccctgctgctggccggcgaggcctcgggcaatcgcgaggtc
gacgagaccgccgctgaggaagccgctgccgcgctgacctcgctggataccgaaggcggc
cgcaccaccgatccggtgcgcatgtacatgcgcgagatgggcacggtcgaactgctgacc
cgcgagggcgaaatcgccatcgccaaacgcatcgaggaaggcctgggcaaggtccaggcc
tcgctgggcctgctgccgtccatcatcgaaagcgttctggaagactacgagctgcacaag
gccggcaagaagcgtctggccgaagtgatcgtgggcttcaacgaccaggtcgacgagccg
gaaccgccggccgtcgtcgccgatgcggtcgacgccaccgacgaggccgatgccgagagc
gtcgacgaggaagtcgatgaggatgctgccgaggaagaggccggcccgaccggtccggat
ccggaggaagtcgcccggcgcatggaggtgctggcctcgaccctggccaagttcaagaag
ggctacgccaaggccggtgccgacaacaaggccggggccaagctgcgcgcggaaatggcc
gacatgttcgtgaccctcaagctgccgctggcgctgaccgacaccctggtcaagaacgtg
cgcgaggtgctgcagcagatcaaggaccaggagcgccgggtgctgcacctgtccacggtc
actgccaagatgccacgcaaggacttcatccgttcgtgggaaggcaaccagaccaacctg
gaatgggtcgacgaagccctcaagcgcaagcagaagtggtcttccggcctgcgtgaggtc
aaggaccagatcatcgccgagcagcgggccaccatcgcggtggagcaggcgatgttcatg
agcctggccgagctgaaggacatcagccggcagatggcctatggcgaggccaaggcacgc
aaggccaagaaggaaatggtcgaggccaacctgcgcctggtgatctccattgccaagaag
tacaccaaccgcggcctgcagttcctggacctgatccaggaaggcaacatcggcctgatg
aaggcggtggacaagttcgaataccggcgcggctacaagttctccacctacgccacctgg
tggatccgccaggccatcacccgctcgatcgccgaccaggcgcgcaccatccgcatcccg
gtgcacatgatcgagacgatcaacaagctcaaccgcatttcccggcagatgctccagcag
tacggccgcgaggccacgccggaggagctggccaaggagatggacatgcccgaggacaag
atccgcaaggtcatgaagatcgccaaggaaccgatctccatggaaaccccgatcggcgac
gacgaggattcgcacttgggcgatttcatcgaggacaccaacgtggagtccccggtggag
aacaccaccaacatcaacctgatggaaacggtgcgcgacgtgctcgcgggcctgaccccg
cgggaagccaaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctg
gaggaggtcggcaagcagttcgatgtcacccgcgagcgcatccgccagatcgaggccaag
gccctgcgcaagctgcgtcacccctcgcgttcggaaaccctgcgcagcttcctggacatc
gattga
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