Pseudoxanthomonas spadix: DSC_10445
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Entry
DSC_10445 CDS
T01643
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC_10445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psd03019
]
DSC_10445
03009 Ribosome biogenesis [BR:
psd03009
]
DSC_10445
Enzymes [BR:
psd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DSC_10445
Messenger RNA biogenesis [BR:
psd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSC_10445
Ribosome biogenesis [BR:
psd03009
]
Prokaryotic type
rRNA processing factors
DSC_10445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
AER56733
UniProt:
G7UP39
LinkDB
All DBs
Position
2055764..2059063
Genome browser
AA seq
1099 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQSGVDHNKAGLRELLREGQEVVVQVDKDERGNKGAALTTFISLAG
RYMVLMPNSPTAGGVSRRIEGDDRAALKAAMDALTIPEDMGVIIRTAGVGRDAEELQWDL
DYLLSVWKAVAEAALSRPAPFLIYQESRLIVRALRDYLRADVGEILVDTEELYATAQEFM
QQVMPHNLRKLKLYTDDIPLFNRFQIESQIEAAYERNVRLPSGGSIVVDQTEALTAIDVN
SSRATKGGDIEETAFQTNCEAAEEVARQLRLRDLGGLVVIDFIDMSSAKHQREVENRLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCEGHGRMRSVESLSLSIIR
VAEEHAMKDNTGQVLVQAPLEIANYLLNEKRNALREIEQRHDAPIIIVADEQLQTPHYEV
TRLRENELGEESAKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTTVKHAQPAPVRQEREA
PAPVEATPAPVVAAPVAQPAAGGVVGWFKRVFGAASSPATAPAQPQRSQTAPARNDHAGN
TGPQRREGGRGQGGSHARGGQQNAQRRERDARNKDKDAIQAPGNGSSPRTRAEPPARPQQ
PQQQAKPQQPPRPPRPQHDGAQEQPANGNRPPRPPREPREPRKPLESGDAVTAAAVATAL
QPDGAAPVQAAPAPQAEAPAAVTEAKAEPQAEPRKPKPPVAPEEDQALADAEDGSDEAGD
DNQTEGVDETGTPRRRRGRRGGRRRRRGSGEAANVAGELDESELGGEEEPVVVPSSSQPE
FDFDDAEPATARPTPARAQANAASTAAVAAASATAVVVEASTGKQAPIAPAPGSEAAQPA
APAVIASPAPVAEQVNPPSPAAAAASAEVAPATEIEVEPRIANHRPAGPEAVVAEPAQAQ
VQAVASEAAPSISTPSAGAPEPVAVAPAQDTPARHAPIAQPQPDLPAEAQSAPSVRQAEA
ARPIEDASVGPAPPAAAPAMPASGPAAGSPFFSADPDLPESMTGHLFEPVSAPRPTQGET
EAHNDDQRAPDRPGSERSA
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcaatgccacgcaggcagaagaactgcgcgtggccatcgtcgacgggcagacg
ctctacgacatcgatatcgagcagccgtccaaggaacagaagaagtccaacatctacaag
ggccgcatcacccggctcgagccgtcgctggaagcggctttcgtcgactatggcgccgag
cgccatggcttcctgccgctcaaggaaatctcccgcgactacttccagtccggggtcgac
cacaacaaggccggcctgcgcgaactgctgcgcgagggccaggaagtggtggtccaggtc
gacaaggacgagcgcggcaacaagggcgcggccctgaccacgttcatctccctggccggc
cgctacatggtgctgatgcccaattcgcccaccgccggcggcgtctcgcgccggatcgag
ggtgacgaccgggccgcgctgaaagccgccatggatgcgctgaccattcccgaggacatg
ggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcagtgggacctg
gattacctgctgagcgtatggaaggccgtggccgaagccgccctgtccaggccggcgccg
tttctgatctaccaggagtcgcgcctgatcgtgcgtgccctgcgcgactacctgcgcgcg
gacgtgggcgagatcctggtcgataccgaggagctctacgccaccgcccaggaattcatg
cagcaggtcatgccgcacaacctgcgcaagctcaagctttacaccgacgacattccgctg
ttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcaacgtgcgcctg
ccctcgggcggctcgatcgtggtcgaccagaccgaagcgctgaccgccatcgacgtcaat
tcgtcccgcgccaccaagggcggcgacatcgaggaaaccgcgttccagaccaactgcgag
gcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcgggctggtggtgatc
gacttcatcgacatgtcctcggccaagcaccagcgtgaagtcgagaaccgcctgcagaac
gcgctcaagtacgatcgggcccgggtccagctgggccggatctcgcgctttggcctgatg
gaaatgagccgccagcgcctgcgccccagcctgggcgagtccagccagatcgtctgcccg
cgctgcgagggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtccatcatccgg
gtggccgaagagcacgccatgaaggacaacaccggccaggtgctggtgcaggcgccgctg
gaaatcgccaactacctgctcaacgagaaacgcaacgccctgcgcgagatcgagcagcgc
cacgatgcgccgatcatcatcgtcgccgacgagcaactgcagaccccgcactacgaggtc
acccgcctgcgcgagaacgagctgggcgaagagtccgccaagcccagctaccagcgcggc
accccgcgcaagctgccggtgcatgcactgaccaaggcccagctcaacatcccggccgca
ccggcggtgaccacggtcaagcacgcccagccggcgccggtgcgtcaggaacgcgaggcc
ccggccccggtcgaagcaacgccggcacccgtcgtcgcagcgccggtcgcccagcccgca
gccggcggcgtggtcggctggttcaagcgcgtgttcggcgccgccagcagcccggccacc
gcgccagcccagccgcagcgcagccagaccgctccggcccgcaacgatcacgctggcaac
accggcccgcagcgtcgcgagggtggccgcggccagggcggcagccatgcccgcggcggc
cagcagaacgctcagcgccgtgagcgcgacgcccgcaacaaggacaaggatgccatccag
gccccgggcaatggctcctcgccgcgcacccgcgcagaaccgccggcccggccgcagcag
ccgcaacagcaggccaagccacagcagccgcccaggccgccccggccgcagcacgacggc
gcccaggagcagccggccaacggcaaccgtccgcccagaccgcctcgcgagccacgcgag
ccgcgcaagccgcttgagagcggtgatgcggtgactgcagcggcggtcgcgaccgccctt
cagcccgatggtgccgcaccggtccaggccgcgcccgcgccgcaggccgaagcgcccgca
gcggtgaccgaagccaaggccgagccgcaggcagaaccgcgcaagcccaagccgccggtc
gcccctgaggaagaccaggccctggccgatgccgaggatggcagcgacgaggcgggtgac
gacaaccagaccgagggtgtcgatgaaaccggcacgccgcgtcgtcgtcgcggccgtcgc
ggcggtcgtcgccgtcgtcgcggcagtggcgaggccgccaatgtcgccggcgaactggac
gaatccgagctggggggcgaggaggaaccggtggtggtgccttcctcctcgcagccggag
ttcgacttcgacgacgccgaaccggcgaccgccaggccgaccccggcgcgggcccaggcc
aatgccgccagcaccgcggcggtggccgccgccagcgcgaccgccgtggtggtcgaggcg
agcaccggcaagcaagcgccgatcgcgcccgcaccgggcagtgaagcagcgcagcccgcc
gcaccggccgtgatcgcctcgcctgccccggtcgccgagcaggtgaacccgccgagcccg
gccgccgctgcagcctcggccgaagtcgcacctgcgaccgagatcgaggtcgaaccgcgg
atcgccaaccaccggcccgccggacccgaggccgtcgtcgccgaaccggcacaggcgcag
gttcaggcggtggccagcgaggccgcgccgagcatctccacgccttcggctggagccccg
gaaccggtcgccgttgccccggcccaggacacgccagcccggcacgccccgatcgcgcag
ccgcagcccgacctgccggccgaagcccagtccgcgccgtccgtgcgccaggccgaggcc
gcccggcccattgaggacgcgtcggtcggcccggcgccgccggctgcagcaccggccatg
ccggccagcggcccggcagcaggctcgccgttcttcagcgccgaccccgacctgccggag
tcgatgaccggccacctgttcgagccggtgtcggccccgcgtccgacccagggggaaacc
gaagcccacaacgacgaccagcgcgcgccggacaggcccgggagcgaacgcagcgcctga
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