Pseudoxanthomonas spadix: DSC_10555
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Entry
DSC_10555 CDS
T01643
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC_10555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psd03019
]
DSC_10555
03016 Transfer RNA biogenesis [BR:
psd03016
]
DSC_10555
Enzymes [BR:
psd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DSC_10555
Messenger RNA biogenesis [BR:
psd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSC_10555
Transfer RNA biogenesis [BR:
psd03016
]
Prokaryotic type
tRNA degradation factors
DSC_10555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
RNase_II_C_S1
KH-I_KHDC4-BBP
DUF7680
KH_KhpA-B
Phage_tube
KH_Vigilin
Motif
Other DBs
NCBI-ProteinID:
AER56755
UniProt:
G7UP61
LinkDB
All DBs
Position
complement(2086016..2088124)
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AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHQVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKKAREGQDFFPLTV
DYQERFYAGGRIPGGFFKREGRATEKETLISRLIDRPLRPLFPEEFRNEVQVIATVMSLN
PDIDGDIPALIGASAAVALTGAPFSGPIGAAKVGYINGQYVLNPTVSELKESRLELVVAG
TSNAVLMVESEAAELSEEVMLGAVMFGHREMQKVIHVINELVVEAGTQSWNWSAPARNQA
LVSALEEAVGNRLAEAFQVRDKLQRRDAIAAIKSDVLESLAGRVQADGWSTAELSKEFSE
LEYQTLRGAVLSTKVRIDGRALDTVRPISAKVSVLPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVSGEYKDNFLFHYNFPPYSVGEAGRMMGPKRREIGHGRLAKRGVLAVMPTME
EFPYTIRVVSEITESNGSSSMASVCGSSLSLMDAGVPIKAPVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTSNGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMAH
ALTTPRQELSEFAPRLITIRIHPDKIREVIGKGGAVIQAITKETGTQIDIQDDGTITIAS
VNGAAGQAAKARIEQITSDIEPGRIYEGKVAKLMDFGAFVTIAPGKDGLVHVSQISVERV
EKVSDKLKEGDLIRVKVLEVDKQGRIRLSMKAVEDGEGMPVE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcacaaagaccttccagtacggcaagcaccaggtcaccctggaaaccggc
gaaatcgcccgccaggccggcggcgcggtcatcgtcaagttcgatgacaccgtactgctg
gtttcggccgtggccgcaaagaaggcccgcgaaggccaggacttcttcccgctgacggtc
gattaccaggaaaggttctatgccggtggccgcattcccggtggtttcttcaagcgcgaa
ggccgcgccacggagaaggagacgctgatctcgcgcctgatcgaccgaccgctgcgtccg
ctgttcccggaagaattccgcaacgaggtccaggtcatcgccacggtgatgtcgctgaac
ccggacatcgacggcgacatcccggccctgatcggggcctcggccgccgtggccctgacc
ggcgcgccgttcagcggaccgatcggcgcggccaaggtcggctacatcaacggtcagtac
gtgctcaacccgaccgtgtccgagctgaaggagtccaggctcgagctggtcgtggccggc
acgtccaacgctgtgctgatggtcgaatccgaagcggccgagctgtccgaggaggtgatg
ctgggcgcggtgatgtttggccatcgcgagatgcagaaggtcatccacgtcatcaacgag
ctggtcgtcgaagccggcacccagtcctggaactggtccgccccggccaggaaccaggcc
ctggtctcggcgctggaggaagccgtcggcaatcggctggccgaagccttccaggtgcgc
gacaagctgcagcgccgcgacgccatcgccgcgatcaagtccgacgtgctggagtcgctg
gccggccgcgtgcaggccgatggctggagcaccgccgagctgtccaaggaattttccgag
ctggaataccagaccctgcgcggcgcggtcctgagcaccaaggtccgcatcgacgggcgc
gcgctggacacggtccgtccgatcagcgccaaggtcagcgtgctgccgcgcacccacggc
tcggccctgttcacccgcggcgagacccaggccatcgtggtcaccaccctgggcactgcg
cgcgacggccaggtgattgatgcggtctcgggcgagtacaaggacaacttcctgttccat
tacaacttccccccgtactcggtgggcgaggccggccgcatgatgggccccaagcgtcgc
gagatcggccacggccgtctggccaagcgtggcgtgctggcggtcatgccgacgatggag
gagttcccctacaccatccgcgtggtctcggaaatcaccgagtccaatggctcctcctcg
atggcctcggtgtgcggcagctcgttgtcgctgatggacgccggcgtgccgatcaaggcg
ccggtggccggcatcgccatgggcctggtcaaggaaggcgacgacttcgtggtgctctcg
gacatcctcggtgacgaggatcacctgggcgacatggacttcaaggtcgccggcacttcc
aacggcgtgtcggcgctgcagatggacatcaagatcgaaggcatcaccgaggaaatcatg
aagcaggccctggcccaggccaaggccggtcgactgcatatcctgggcgagatggcccac
gcgctgaccacgccgcgccaggagctgagcgagttcgcgccacgcctgatcaccatcagg
atccaccccgacaagatccgcgaggtgatcggcaagggcggcgcggtgatccaggccatc
accaaggaaaccggcacccagatcgatatccaggacgatggcaccatcaccatcgcatcg
gtgaacggcgccgccggccaggccgccaaggcccgcatcgagcagatcacctcggacatc
gagccgggccgcatctacgagggcaaggtcgccaagctgatggacttcggtgcgtttgtc
accatcgcgccgggcaaggatggtctggtccatgtctcgcagatttccgtcgagcgcgtg
gaaaaggtttccgacaagctcaaggaaggcgacctgatccgggtcaaggtgctggaagtg
gacaagcagggccgcatccgcctgtccatgaaggcggtggaagacggtgagggcatgccg
gtcgagtaa
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integrated database retrieval system
