Pseudoxanthomonas spadix: DSC_10565
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Entry
DSC_10565 CDS
T01643
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
psd
Pseudoxanthomonas spadix
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psd03016
]
DSC_10565 (truB)
Enzymes [BR:
psd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
DSC_10565 (truB)
Transfer RNA biogenesis [BR:
psd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DSC_10565 (truB)
Prokaryotic type
DSC_10565 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
AER56757
UniProt:
G7UP63
LinkDB
All DBs
Position
complement(2088702..2089739)
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AA seq
345 aa
AA seq
DB search
MVSIDPAATPDDGAGRGGPAPASSRRRPQRARTRFGRVDGILLLDKPAGMSSNQALQRVR
HLFCAEKGGHTGALDPLATGLLPICFGEATKIAGNLLGASKAYDTVARLGQVTDTDDAQG
QVLCERNVQAYPIDRIDAALRSLTGRIQQRPPIYSALKRGGEPLYAKARRGEVVEVQARE
VFVRTFELQAADDLLDDGRPLLRLHVECGSGTYVRSLVRDLGEALGCGAHVAQLRRLWVD
PFREPRMWTIEQLQALAERDPRALQACLLPVEAGLVGLPRIDLTVEAAARFGQGQRLNKV
PGPAGLVAVFSETGAVVGLAQLSRDGVLSPQRLFNWPTGGGLSPD
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgatcgaccccgccgcgaccccggacgacggtgccggacgtggcggtccggcg
ccggccagcagccgccggcgtccgcagcgtgcgcgcaccaggttcggtcgcgtcgacggc
atcctgctgctcgacaagcctgccggcatgagttccaaccaggccctgcagcgggtgcgg
cacctgttctgcgccgagaagggcggccacaccggcgcactggatccgctggccaccggg
ctgctgccgatctgcttcggcgaagcgaccaagatcgccggcaacctgctcggcgccagc
aaggcctacgacaccgtggcccgcctgggccaggtcaccgataccgatgatgcccagggc
caggtgctgtgcgaacgcaacgtccaggcctatccgatcgaccggatcgacgcggccctg
cgttcgctgaccggccgtatccagcagcgcccgccgatctattcggcactcaagcgcggg
ggcgagccgctgtatgccaaggcccgtcgcggtgaagtggtggaggtccaggcacgcgag
gtgttcgtgcgcaccttcgagctgcaggccgccgacgacctgctcgacgacggccgtccg
ctgctgcgcctgcacgtggaatgcggctcgggcacctacgtgcgcagcctggtccgcgac
ctgggtgaggcgctggggtgtggcgcgcacgtggcgcagctgcgccggctgtgggtcgat
ccgttccgcgagccgcgcatgtggaccatcgagcagctccaggccctggccgaacgcgac
ccacgcgccctgcaggcctgtctgctgccggtggaggcgggcctggtcggcctgccgcgg
atcgacctgaccgtcgaggccgccgcccgcttcggccagggccagcgcctgaacaaggtg
cccgggccggccggcctggtggcggtgttttccgaaaccggcgcggtggtcgggctggcc
cagctgtccagggacggggtgctttcgccccagcggctgttcaactggccgaccggcggc
ggcctgtcgccggactga
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