Pseudoxanthomonas spadix: DSC_11540
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Entry
DSC_11540 CDS
T01643
Symbol
rumA
Name
(GenBank) 23S rRNA m(5)U1939 methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psd
Pseudoxanthomonas spadix
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psd03009
]
DSC_11540 (rumA)
Enzymes [BR:
psd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DSC_11540 (rumA)
Ribosome biogenesis [BR:
psd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DSC_11540 (rumA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltr_RsmB-F
PCMT
TRAM
MTS
Methyltransf_11
Methyltransf_ANTKMT
RrnaAD
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_37
Methyltransf_15
UPF0020
Methyltransf_23
PabTrmU54_TRAM_dom
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
AER56952
UniProt:
G7UQE9
LinkDB
All DBs
Position
complement(2306579..2307919)
Genome browser
AA seq
446 aa
AA seq
DB search
MARSPRIDKTPFELSIHDLSHDGRGVGRRPSAVQGQSGKAVFVSGALPGERVLVEQTARS
RQFDQARTLKVLEASPDRVDPRCPHFGTCGGCVLQHLDPTRQIAAKQHTLLENLERIGHV
KPESVLPALTEGSWGYRRKGRFSVRRVEKKDRTLIGFREQDPRFVADLRQCHTLIPQIGF
RIQALGALVDSLDGRADIPQIEFIAGDEAIALVVRHLNPLTPADLGRLTAFAQAENFAIF
LQPGGNHTVHPLWPAQVPLSFRLARWDVELAFRPLDFIQVNARLNEKMIAHALGLLDPQP
GERVLDLFCGLGNFTLPLARLVGEVVGVEGEAGLVARARDNAQRNGLANAQFFAADLTLD
QRNAPWMKQGLDKLLLDPPRSGAIEVLRQLPLKKFERIVYVSCHPGSLARDAGYLVNECG
FRLVSAGVMDMFPHTAHVESIALFQR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgttccccgcgcatcgacaagaccccctttgaactgtccatccacgacctcagc
cacgacggccgtggcgtgggccgccgcccttcggccgtgcagggccagtcgggcaaggcg
gtgttcgtctccggcgcgctgccgggcgagcgcgtcctggtcgaacagaccgcgcgcagc
cgccagttcgaccaggcccgcaccctgaaggtgctcgaggcatcgcccgaccgcgtcgac
ccacgctgcccgcatttcggcacctgcggcggctgcgtgctgcagcacctggacccgacc
cggcagatcgccgccaagcagcacacgctgttggaaaacctggagcggatcggccacgtc
aagcccgagtcggtgctgccggcgctgacagagggcagctggggctaccgccgcaagggc
cggttctcggtccgccgggtggagaagaaggacaggaccctgatcggtttccgcgagcag
gatccgcgcttcgtcgccgacctgcgccagtgccatacgctgatcccgcagatcggtttc
aggatccaagcgctcggcgccctggtcgacagcctggacgggcgcgcggatatcccgcag
atcgagttcatcgccggcgatgaggccatcgccctggtcgtgcgccacctcaatccactg
acgccggcggacctgggcaggctcaccgccttcgcccaggccgagaacttcgccatcttc
ctgcaacccggcggcaaccacaccgtgcatccgctgtggccggcgcaggtgccgctgtcg
ttccgattggcgcggtgggatgtggaactggcgttccggccgctggacttcatccaggtc
aacgccaggctcaacgagaagatgatcgcccacgccttgggcctgctcgacccgcagccg
ggcgagcgggtgctggacctgttctgcgggctgggcaacttcaccctgccgctggcgcgc
ctggtgggcgaggtggtcggcgtggaaggcgaggccggcctggtcgcccgtgccagggac
aacgcccagcgcaacggcctggccaatgcgcagttcttcgccgccgacctgaccttggac
cagcgcaatgcaccgtggatgaaacagggcctggacaagctgttgctggacccgccgcgc
tcgggcgcgatcgaggtgctcaggcagctgccgctgaagaaattcgagcgcatcgtctac
gtcagctgccatcccggctcgctggcgcgcgatgccggctacctggtcaacgaatgcggc
ttcaggctggtcagtgccggggtgatggacatgttcccgcacaccgcgcacgtggagtcg
atcgccctgttccagcgctga
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