Pseudoxanthomonas spadix: DSC_12260
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Entry
DSC_12260 CDS
T01643
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSC_12260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psd03400
]
DSC_12260
DNA repair and recombination proteins [BR:
psd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSC_12260
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSC_12260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
AER57096
UniProt:
G7URA4
LinkDB
All DBs
Position
complement(2471639..2473657)
Genome browser
AA seq
672 aa
AA seq
DB search
MTERFQLVSPYSPSGDQPAAIERLTGNFESGLAKQTLLGVTGSGKTYTIANVIERIQKPT
LVMAPNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVAASDTFIEKDSSINEHIE
QMRLAATKTLLSRRDAIVVATVSAIYGLGAPEDYLSLRLILSRGEHIDQRQLIRHLTDLQ
YTRNEYELQRGAFRVRGEVIDVHPAESDVEALRIELFDGEVENLTLFDPLTGETLRKVPR
FTVYPKTHYATTRERTLSAVDSIKIELKERLEQLYQQNKLVEAQRLAQRTQFDLEMMAEV
GFCSGIENYSRHLTGKAPGEPPPTLFDYLPADALLVVDESHVTIPQIGAMYKGDRSRKET
LVEFGFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESGGEIIELVVRPTGLID
PDIEIRPVATQVDDLLSQINERVAWGDRVLVTTLTKRMAENLTEYLGEHGVKVRYLHSDV
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIG
RAARNLRGKAILYADRVTRSMQAAIEETDRRRAKQVEYNAEHGIVPRSTVRPIVDILEGA
RDAANDEPTRRGKGRRVAEPVEDYRSLSQAQIAARLKALETRMYQHARDLEFEDAARLRD
EIHKLKTAALVV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacgcttccagcttgtttcgccgtattcgccctcgggcgaccagccggccgcc
atcgaaaggctgaccgggaatttcgagtcgggcctggccaagcagaccctgctgggggtg
accggctcgggcaagacctacaccatcgccaacgtgatcgagcgcatccagaagccgacc
ctggtgatggcgccgaacaagaccctggccgcgcagctgtatggcgagttcaaggcgttc
ttcccgcacaacgcggtcgagtacttcgtcagctattacgactactaccagcccgaggcc
tacgtggccgcttcggacaccttcatcgagaaggacagctcgatcaacgagcacatcgag
cagatgcgcctggccgcgaccaagaccctgctgtcgcggcgcgatgcgatcgtggtggcc
accgtctcggcgatctacggcctgggcgcgccggaggactacctgtcgctgcgcctgatc
ctctcgcgcggcgagcacatcgaccagcgccagctgatccgccacctcaccgacctgcag
tacacgcgcaacgaatatgagctgcagcgcggcgccttccgcgtgcgcggcgaggtaatc
gacgtgcacccggccgaaagcgacgtggaagcgttgcgcatcgagctgttcgatggcgag
gtggaaaacctgaccctgttcgacccgctcaccggtgagaccctgcgcaaggtgccgcgc
ttcaccgtctatcccaagacccattacgccaccacccgcgagcgcacgttgagcgcggtg
gactcgatcaagatcgagctgaaggaacggctggagcagctgtaccagcagaacaagctg
gtcgaagcccagcgcctggcccagcgcacccagttcgacctggaaatgatggccgaggtg
gggttctgctcgggcatcgagaactactcgcggcacctgaccggcaaggcgccgggcgag
ccgccgccgaccctgttcgactacctgcccgccgatgcactgctggtggtcgacgaatcg
cacgtgaccattccgcagatcggggcgatgtacaagggcgatcgctcgcgcaaggagacg
ctggtggagttcggtttccgcctgccttcggcgctggacaaccggccgctgcgcttcgag
gaatgggaggcgcgttcgccgcgcagcatctacgtctcggccaccccgggcccgtacgaa
ctgcgcgagtccggtggcgagatcatcgagctggtggtgcgccccaccggcctgatcgac
ccggacatcgagatccggccggtcgccacccaggtcgacgacctgctctcgcagatcaac
gaacgggtggcctggggcgaccgcgtgctggtcaccaccctgaccaagcgcatggccgag
aacctgaccgaatacctgggcgagcacggcgtcaaggtgcgctacctgcattcggacgtg
gacaccgtggagcgggtggagatcattcgcgacctgcgcctgggcaagttcgacgtgctg
gtgggcatcaacctgctgcgcgagggcctggacatgcccgaggtgtcgctggtggcgatc
ctggatgcggacaaggagggcttcctgcgttcgaccggctcgctgatccagaccattggc
cgcgccgcccgcaacctgcgcggcaaggcgatcctgtatgccgaccgggtgacccgttcg
atgcaggcagccatcgaggaaaccgaccgccgccgcgccaagcaggttgaatacaacgcc
gaacacggcatcgtgccccggtccaccgtgcggccgatcgtggacatcctggaaggcgcg
cgtgacgccgccaacgacgagccaaccaggcgcggcaagggccgccgtgtcgccgagccg
gtcgaggattaccgcagcctgagccaggcgcagatcgcggccaggctcaaggccctggag
acacgcatgtaccagcacgcgcgcgatctggagttcgaggacgccgcgcgcctgcgcgac
gagatccacaagctgaagaccgccgccctggtggtctga
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