Pseudomonas sp. SD17-1: N0B28_07925
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Entry
N0B28_07925 CDS
T11807
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
psdd Pseudomonas sp. SD17-1
Pathway
psdd02020
Two-component system
psdd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psdd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N0B28_07925
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N0B28_07925
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
psdd02022
]
N0B28_07925
02035 Bacterial motility proteins [BR:
psdd02035
]
N0B28_07925
Two-component system [BR:
psdd02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
N0B28_07925
Bacterial motility proteins [BR:
psdd02035
]
Flagellar system
Flagellar assembly proteins
Others
N0B28_07925
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_16
AAA_5
HTH_20
HTH_30
AAA_2
FleQ
MerR
AAA_3
AAA
MCM
Mg_chelatase
AAA_19
nSTAND3
HTH_24
TIP49
HTH_23
HTH_28
ATPase
HTH_11
Sigma70_r4_2
DUF2249
AAA_22
PDE8A_N
HTH_17
OKR_DC_1_N
HTH_1
nSTAND6
AAA_14
HTH_Mga
AAA_7
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
WEJ23190
LinkDB
All DBs
Position
1736462..1737847
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AA seq
461 aa
AA seq
DB search
MRAIKVLLVEDDRVLRQALADTLELGGFAYHAVGSAEEALEVAASQPFSLVVSDVNMPGM
DGHQLLAALRARQPQLPVLLMTAHAAVERAVDAMRQGAADYLVKPFEPRALLDLVARHAL
GVASGADADGPVAREPASAQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSLRAD
QPFVAINCAAIPDNMLEATLFGHEKGSFTGAIAAQPGKFEQADGGTLLLDEISEMPLGLQ
AKLLRVLQEREVERVGGRKPIALDIRVVATTNRDLAGEVAAGRFREDLFYRLSVFPLAWR
PLRERSADILPLAERLLARHVNKMKYAPVRLSAQAQACLQGYPWPGNVRELDNAIQRALI
LQQGGVIEAADFCLAGVLPLLATSPVEPVPVLAEPSEPAGLGDDLRRHEFQVIIDTLRAE
RGRRKEAAERLGISPRTLRYKLAQMRDAGLDVEASLYASGV
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagggcgatcaaggttctgctggtcgaggatgaccgcgtactgcgccaggccctggcc
gataccctggagctgggcggttttgcctatcatgcagtgggctcggccgaagaagcgctg
gaagtggcggccagtcagcccttcagcctggtggtcagcgacgtcaacatgccgggaatg
gacggccaccagttgctggccgcgttgcgggcccgccagccgcagttgccggtgctgctg
atgaccgcgcacgctgccgttgagcgtgcagtggatgcgatgcgccagggcgctgcggac
tatctggtcaagcccttcgagccacgcgcattgctcgacctggtggcccgtcatgccctt
ggcgttgccagcggcgcggacgccgacggtccggtggcgcgcgagcctgccagtgcgcag
ttgctcgaactggccgcgcgggtggcgcgcagtgattccaccgtgctgatttccggcgaa
tcgggcaccggcaaggaggtgctggcgcgctacattcaccagcagtccctgcgtgccgac
cagccattcgtggccatcaactgcgccgccatccccgacaacatgctcgaagccacgttg
ttcggacatgaaaagggctcgttcaccggggcgatagccgcccagccaggcaagttcgag
caggccgacggtggcacgctgctgctcgacgagatttccgaaatgccgctggggctgcag
gccaagctgctgcgagtgctgcaggagcgcgaggtcgagcgggtaggcgggcgcaagccg
atcgcgctggacatccgcgtggtcgctaccaccaaccgcgaccttgccggcgaagtggcg
gcggggcggtttcgcgaagacctgttctatcgcctgtcggtgttcccgctggcctggcga
ccgctgcgcgagcgcagcgccgacattctgccgctggccgagcgtctgctggcgcgacac
gtcaataaaatgaagtatgcccccgtgcgcctgtcggcccaggcccaggcctgcctgcaa
ggctatccgtggccgggcaacgtgcgcgagctggacaacgccatccagcgggcgctgatc
ctgcagcagggcggggtgatcgaggcggcggacttctgcctggccggggtgctgccgctg
ctggcgacatcgcccgtagagccggtgccggtgctggccgagccgtccgaaccagccggg
ctgggggatgacctgcgccgccacgagttccaggtgatcatcgataccctgcgcgccgag
cgcgggcgccgcaaggaggctgccgagcgtctgggcatcagcccgcgcaccttgcgctac
aagctggcacagatgcgtgatgccggcctggatgtggaggcgagtctctacgccagcggc
gtgtga
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