Pseudomonas sp. SD17-1: N0B28_23005
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Entry
N0B28_23005 CDS
T11807
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
psdd Pseudomonas sp. SD17-1
Pathway
psdd00550
Peptidoglycan biosynthesis
psdd01100
Metabolic pathways
psdd01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
psdd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
N0B28_23005 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
N0B28_23005 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psdd01011
]
N0B28_23005 (mrdA)
Enzymes [BR:
psdd01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
N0B28_23005 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
psdd01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
N0B28_23005 (mrdA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Glyco_hydro_3_C
TPR_7
Motif
Other DBs
NCBI-ProteinID:
WEJ21093
LinkDB
All DBs
Position
complement(5039137..5041089)
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AA seq
650 aa
AA seq
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MSQPIRLKDHEKDARLVRSRVVVGAVAIVLLICVLIARLYYLQVIQYDYHSTLSENNRVH
VQPIPPTRGLIFDRNGVIVADNRPSFSLTMTRERSGDWQQVLDSIVEVLELTEDDRALFE
KRMRQGRRPFEPVPILFELTEEQIARIAVNQFRLPGVEVAAQLVRHYPQGAHFAHSVGYV
GRINEKELKSLDPVNYSGTHHIGKTGIERFYEAELHGQVGYEEVETNARGRVLRVLKRTD
PIPGKDIVLSLDIKLQEAAEAALGGRRGAIVALDPNTGEVLAMVSQPSFDPNPFVTGISF
KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIVGLDTGAVTATSRVFDPGYYQLPNY
DHKYRNWNRTGDGWVDLDTAIMRSNDTYFYDLAHKVGIDRLSAYMNRFGIGQKVALDMFE
ESSGLMPSRDWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIASKGKWNRPHL
AKTVEGVRPVDENPMEDIVLRDKADWNRVTHGMEMVMHGARGTARKAAIGAQYRIAGKSG
TAQVVAIKQGEKYDRNKVQERHRDHALFVSFAPAENPKIVVSVMVENGESGSGVAAPVVR
QVMDAWLLDQNGRLKPEYANPAGAPTNVSVTTPASPPANPTTAQETAREE
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagccgattcgcctcaaggaccacgagaaagacgcccgcctggtgcgtagccgc
gtcgtggtcggcgcagtcgcgatcgtgctgctgatttgcgtgctgatcgcccggctgtac
tacctgcaggtcattcagtacgactaccactccacgctgtcggagaacaaccgggtgcat
gtgcagccgatcccgccgacacgcgggctgatcttcgaccgcaacggggtgatcgtcgcc
gacaaccggccaagcttcagcctgaccatgacccgcgagcgttccggtgactggcagcag
gtgctcgattccatcgtcgaggtgctggagctgaccgaggacgaccgggcactgttcgaa
aaacgcatgcgccaggggcgtcggcccttcgagccggtaccgatcctgttcgagctgacc
gaagagcagatcgcccggatagcggtgaaccagttccgcctgccgggtgtggaggtggcg
gcgcagctggtacgccattacccgcagggtgcgcactttgcgcattcggtcggctatgtg
gggcgcatcaacgaaaaagagctcaagtccctcgacccggtcaactacagtggcacccac
catatcggcaagaccggtatcgagcgcttctacgaagccgagctgcatggccaggtcggc
tacgaagaggtcgagaccaacgcccgtggccgggtgctgcgggtgctcaagcgtaccgat
ccgatccccggcaaggacatcgtcctgagcctggacatcaagctgcaggaagccgccgaa
gcggcgctgggcggtcgtcgtggcgcgatcgtggcgctcgacccgaacacaggtgaagtg
ctggcgatggtcagtcagccgagcttcgaccccaaccccttcgtcaccggcatcagcttc
aaggcctatgccgagctgcgcgactcgatcgaccgcccgctgttcaaccgcgtactgcgc
ggcctgtacccgccggggtcgacgatcaagccggcagtggccatcgtcggcctggacacc
ggcgcggtcacggccacctcgcgggtgttcgacccgggctactaccaactgcccaactat
gaccacaagtaccgcaactggaaccgcaccggtgatggctgggtcgacctcgacacggcg
atcatgcgttccaacgacacctatttctacgacctggcgcacaaggtcggcatcgaccgg
ctttcggcctacatgaaccgcttcggcatcggccagaaggtcgcgctggacatgttcgag
gaatcctccgggctgatgccgtcgcgtgactggaagcgcgcgacccggcgccaggcctgg
ttccccggcgagacactgatcctcggcatcggccagggctacatgcaggccacgccgctg
caactggcccaggccaccgcgctgatcgccagcaagggcaagtggaaccgcccgcacctg
gccaagaccgtcgagggcgtgcgcccggtggacgagaacccgatggaagacatcgtgctg
cgtgacaaggccgactggaacagggtcacccacggcatggagatggtgatgcacggtgcc
cgtggtaccgcgcgcaaggccgccatcggcgcgcagtaccgcatcgccggcaagagtggt
actgcgcaggtggtcgcgatcaagcagggcgagaagtatgaccgcaacaaggtgcaggag
cgtcaccgcgaccacgccctgttcgtgtccttcgccccggccgaaaacccgaagatcgtg
gtgtcggtgatggtcgagaacggtgagtccggctccggcgtggccgcccccgtggtgcgc
caggtgatggacgcctggctgctcgaccagaacggtcgcctcaagcctgaatacgccaac
cccgcgggcgccccgaccaatgtgtcggtgaccaccccggcctccccgccagccaaccct
acaaccgcgcaggaaacggcccgtgaagagtaa
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