Pseudomonas sp. SD17-1: N0B28_23145
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Entry
N0B28_23145 CDS
T11807
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psdd Pseudomonas sp. SD17-1
Pathway
psdd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psdd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N0B28_23145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdd03021
]
N0B28_23145
Transcription machinery [BR:
psdd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N0B28_23145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_20
GerE
KORA
Sigma70_ECF
HTH_40
HTH_23
HTH_Tnp_ISL3
HTH_24
HTH_10
HTH_38
HTH_7
Rv2175c_wHTH
HTH_28
HTH_50
HTH_11
Motif
Other DBs
NCBI-ProteinID:
WEJ21121
LinkDB
All DBs
Position
complement(5068666..5069166)
Genome browser
AA seq
166 aa
AA seq
DB search
MSALEPLALHQLYSEHNGWLKGWLRMRLGNSADAADLAQDTFVRVMTARNAAPIREPRGY
LTAIARSLLIDKSRRRAIEQAYLVALAQKPEPVEVSPEVRLSILEMLVAVDSLLDGLGKR
TREIFLSVQLEGQTYVAVAERLGVSVTTVKNHLVRAMTECLLLADN
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcactcgagcctttggcacttcaccagctttattccgaacacaacggttggctg
aaaggctggttgcgcatgcgcctgggcaattcggccgatgcggcggatctggctcaggac
accttcgtgcgggtcatgacggcacgcaacgccgcgccgatccgagagccgcggggctac
ctgactgcaattgcgcgctcgctgttgatcgacaagtcgaggcgacgggcgatcgaacag
gcgtatctggtggccctggcgcagaagcctgaaccggtcgaggtatcacctgaggtgcgc
ttgtccattctcgagatgctggtggcggtcgacagcctgctggacgggctgggcaagcgt
acccgggagatctttctgtcggtgcagctggaggggcagacctatgtggcggtggccgaa
cgcctcggggtctcggtcaccacggtgaagaaccatctggtgcgagccatgaccgagtgc
ctgctgctggcggacaactga
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integrated database retrieval system
